Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Shewanella putrefaciens CN-32  

Data for CP000681  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000681.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000681_0678 CDS_770748-768946 68.4 6.9e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000681_0678 1/1 364 433 .. 1 70 [] 68.4 6.9e-20

Alignments of top-scoring domains:
CP000681_0678: domain 1 of 1, from 364 to 433: score 68.4, E = 6.9e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpeeareald
ER IARELHDs+gQ Ls +k+q++l+r+ l ++ +++ +++ +l
CP000681_0 364 ERGVIARELHDSLGQVLSFLKIQISLLRKNLAYscRSP--AVENQLN 408

eirelarealaevRrllgdLRpaal<-*
ei e +++a+a++R+ll+++R ++
CP000681_0 409 EINEGVSTAYAQLRELLSTFRLTIK 433


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 23 0|==
-13 96 0|=======
-12 175 44|===*=========
-11 274 364|==================== *
-10 725 844|==================================================== *
-9 808 959|==========================================================*
-8 591 739|=========================================== *
-7 463 464|=================================*
-6 286 263|==================*==
-5 246 141|==========*=======
-4 108 73|=====*==
-3 76 37|==*===
-2 49 19|=*==
-1 26 9|*=
0 7 5|*
1 7 2|*
2 3 1|*
3 3 0|=
4 3 0|=
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 684.4882
P(chi-square) = 0

Total sequences searched: 3972

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: