Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for   

Data for CP000683  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000683.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000683_0224 CDS_323779-325275 83.5 6.1e-24 1
CP000683_0437 CDS_598396-596954 58.7 6.6e-17 1
CP000683_0686 CDS_973019-971220 51.2 8.6e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000683_0224 1/1 269 334 .. 1 87 [] 83.5 6.1e-24
CP000683_0437 1/1 273 331 .. 1 87 [] 58.7 6.6e-17
CP000683_0686 1/1 371 441 .. 1 87 [] 51.2 8.6e-15

Alignments of top-scoring domains:
CP000683_0224: domain 1 of 1, from 269 to 334: score 83.5, E = 6.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L + e+
CP000683_0 269 SNTKFFANISHELRTPLNAIIGFSEILMS---------ERDAEKS-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
CP000683_0 305 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 334

CP000683_0437: domain 1 of 1, from 273 to 331: score 58.7, E = 6.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +la++sH+LRTPLt +++ +el++e +e+
CP000683_0 273 KKTTMLAMISHDLRTPLTRMKLQLELMEE-------------SEE-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++++in Ld+++ e+
CP000683_0 305 -------------SKGLKQDILTMQQMINSYLDFAKGEST 331

CP000683_0686: domain 1 of 1, from 371 to 441: score 51.2, E = 8.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
CP000683_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
CP000683_0 407 -----EKVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 441


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 12 0|===
-12 39 22|=====*====
-11 123 114|============================*==
-10 167 212|========================================== *
-9 190 219|================================================ *
-8 135 164|================================== *
-7 126 103|=========================*======
-6 72 59|==============*===
-5 40 32|=======*==
-4 25 17|====*==
-3 11 9|==*
-2 11 4|*==
-1 5 2|*=
0 3 1|*
1 2 0|=
2 0 0|
3 0 0|
4 1 0|=
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 45.1561
P(chi-square) = 8.633e-07

Total sequences searched: 968

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: