Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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14 projects found  

1 accessions found for Roseiflexus sp. RS-1  

Data for CP000686  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000686.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000686_3682 CDS_4719040-4715921 102.3 1.3e-28 1
CP000686_0197 CDS_247812-249875 90.6 2.7e-25 1
CP000686_4341 CDS_5577357-5583818 90.0 4.1e-25 1
CP000686_2231 CDS_2837312-2834595 89.9 4.3e-25 1
CP000686_1269 CDS_1614837-1612153 89.2 6.9e-25 1
CP000686_0400 CDS_527123-525036 87.5 2.1e-24 1
CP000686_2280 CDS_2899205-2901757 86.6 3.6e-24 1
CP000686_1997 CDS_2548030-2549544 83.9 2.2e-23 1
CP000686_3523 CDS_4511027-4512760 79.8 3.2e-22 1
CP000686_3728 CDS_4776778-4775600 77.8 1.1e-21 1
CP000686_3786 CDS_4851486-4854554 77.8 1.2e-21 1
CP000686_1568 CDS_1985362-1988061 76.6 2.5e-21 1
CP000686_1268 CDS_1612156-1610981 75.1 6.8e-21 1
CP000686_0592 CDS_760246-761673 73.2 2.4e-20 1
CP000686_0775 CDS_998132-997056 71.8 5.7e-20 1
CP000686_0189 CDS_242980-241310 70.5 1.3e-19 1
CP000686_2336 CDS_2972773-2974626 70.0 1.9e-19 1
CP000686_3106 CDS_4013137-4011419 69.0 3.6e-19 1
CP000686_2947 CDS_3806240-3808699 67.8 7.9e-19 1
CP000686_1567 CDS_1983080-1985215 67.0 1.4e-18 1
CP000686_3401 CDS_4369803-4371218 66.5 1.8e-18 1
CP000686_3647 CDS_4674894-4673443 66.4 2e-18 1
CP000686_0501 CDS_654946-653276 65.6 3.4e-18 1
CP000686_0224 CDS_286194-283660 64.4 7.4e-18 1
CP000686_0465 CDS_615840-612787 63.8 1.1e-17 1
CP000686_3274 CDS_4207569-4208774 63.2 1.6e-17 1
CP000686_0110 CDS_134515-133367 61.2 6e-17 1
CP000686_1564 CDS_1977704-1980004 60.9 7.2e-17 1
CP000686_4371 CDS_5622338-5620182 60.5 9.1e-17 1
CP000686_2559 CDS_3256182-3257402 57.0 8.8e-16 1
CP000686_4061 CDS_5208597-5210147 55.7 2.1e-15 1
CP000686_0306 CDS_404744-405967 55.0 3.3e-15 1
CP000686_1970 CDS_2518664-2514921 52.3 1.9e-14 1
CP000686_3940 CDS_5058869-5061988 49.2 1.5e-13 1
CP000686_0201 CDS_253010-254275 47.9 3.4e-13 1
CP000686_2299 CDS_2928447-2926507 47.7 3.9e-13 1
CP000686_2982 CDS_3846571-3844457 47.5 4.5e-13 1
CP000686_1843 CDS_2353526-2354992 43.9 4.8e-12 1
CP000686_2014 CDS_2566732-2565263 42.9 9e-12 1
CP000686_2240 CDS_2845425-2847464 38.6 1.5e-10 1
CP000686_2770 CDS_3550643-3552616 27.3 2.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000686_3682 1/1 786 854 .. 1 87 [] 102.3 1.3e-28
CP000686_0197 1/1 194 262 .. 1 87 [] 90.6 2.7e-25
CP000686_4341 1/1 1911 1979 .. 1 87 [] 90.0 4.1e-25
CP000686_2231 1/1 665 733 .. 1 87 [] 89.9 4.3e-25
CP000686_1269 1/1 617 685 .. 1 87 [] 89.2 6.9e-25
CP000686_0400 1/1 458 524 .. 1 87 [] 87.5 2.1e-24
CP000686_2280 1/1 741 807 .. 1 87 [] 86.6 3.6e-24
CP000686_1997 1/1 259 326 .. 1 87 [] 83.9 2.2e-23
CP000686_3523 1/1 308 376 .. 1 87 [] 79.8 3.2e-22
CP000686_3728 1/1 152 217 .. 1 87 [] 77.8 1.1e-21
CP000686_3786 1/1 503 571 .. 1 87 [] 77.8 1.2e-21
CP000686_1568 1/1 658 726 .. 1 87 [] 76.6 2.5e-21
CP000686_1268 1/1 169 237 .. 1 87 [] 75.1 6.8e-21
CP000686_0592 1/1 239 306 .. 1 87 [] 73.2 2.4e-20
CP000686_0775 1/1 132 196 .. 1 87 [] 71.8 5.7e-20
CP000686_0189 1/1 290 358 .. 1 87 [] 70.5 1.3e-19
CP000686_2336 1/1 375 443 .. 1 87 [] 70.0 1.9e-19
CP000686_3106 1/1 345 410 .. 1 87 [] 69.0 3.6e-19
CP000686_2947 1/1 433 499 .. 1 87 [] 67.8 7.9e-19
CP000686_1567 1/1 469 537 .. 1 87 [] 67.0 1.4e-18
CP000686_3401 1/1 227 291 .. 1 87 [] 66.5 1.8e-18
CP000686_3647 1/1 238 302 .. 1 87 [] 66.4 2e-18
CP000686_0501 1/1 311 375 .. 1 87 [] 65.6 3.4e-18
CP000686_0224 1/1 482 546 .. 1 87 [] 64.4 7.4e-18
CP000686_0465 1/1 790 858 .. 1 87 [] 63.8 1.1e-17
CP000686_3274 1/1 181 249 .. 1 87 [] 63.2 1.6e-17
CP000686_0110 1/1 147 211 .. 1 87 [] 61.2 6e-17
CP000686_1564 1/1 504 574 .. 1 87 [] 60.9 7.2e-17
CP000686_4371 1/1 490 558 .. 1 87 [] 60.5 9.1e-17
CP000686_2559 1/1 187 254 .. 1 87 [] 57.0 8.8e-16
CP000686_4061 1/1 283 349 .. 1 87 [] 55.7 2.1e-15
CP000686_0306 1/1 167 231 .. 1 87 [] 55.0 3.3e-15
CP000686_1970 1/1 887 952 .. 1 87 [] 52.3 1.9e-14
CP000686_3940 1/1 668 734 .. 1 87 [] 49.2 1.5e-13
CP000686_0201 1/1 204 270 .. 1 87 [] 47.9 3.4e-13
CP000686_2299 1/1 424 489 .. 1 87 [] 47.7 3.9e-13
CP000686_2982 1/1 462 530 .. 1 87 [] 47.5 4.5e-13
CP000686_1843 1/1 263 329 .. 1 87 [] 43.9 4.8e-12
CP000686_2014 1/1 254 317 .. 1 87 [] 42.9 9e-12
CP000686_2240 1/1 457 521 .. 1 87 [] 38.6 1.5e-10
CP000686_2770 1/1 253 314 .. 1 82 [. 27.3 2.4e-07

Alignments of top-scoring domains:
CP000686_3682: domain 1 of 1, from 786 to 854: score 102.3, E = 1.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+a++sHELRTPLt+I+gy+++Ll+ + ++l +e+
CP000686_3 786 MKSEFVAMVSHELRTPLTSIKGYVDMLLD------GDAGPLADEH-- 824

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++ a+rll LindlLd+srieag
CP000686_3 825 ----------QELLRIVKSNADRLLLLINDLLDMSRIEAG 854

CP000686_0197: domain 1 of 1, from 194 to 262: score 90.6, E = 2.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ ++ ++ + + +++ ++eq+
CP000686_0 194 IKSEFLANMSHELRTPLNSIINFTRIIST------GARGPVTPEQI- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+++++++e+ll Lind+Ldls+ieag
CP000686_0 234 -----------DYLNRVRQSGEHLLGLINDILDLSKIEAG 262

CP000686_4341: domain 1 of 1, from 1911 to 1979: score 90.0, E = 4.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f++++sHELRTPLt+I+gy++l+l +++ ++l+eeq
CP000686_4 1911 AKRDFISSVSHELRTPLTSIKGYVDLMLLGAN------GPLNEEQ-- 1949

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++ a+rl +Lind+L++ ri++
CP000686_4 1950 ----------KKSLGVVKNNANRLMDLINDILEIGRIDSD 1979

CP000686_2231: domain 1 of 1, from 665 to 733: score 89.9, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ ++sHELRTP+t+I+g+++lL + + ++ +e q
CP000686_2 665 LKTEFIGTVSHELRTPMTSIKGFTQLLVM------GNLGPVNETQ-- 703

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l++i++ aer+ ++indlLd+++ie+g
CP000686_2 704 ----------REFLNIIQSNAERMIAIINDLLDITKIETG 733

CP000686_1269: domain 1 of 1, from 617 to 685: score 89.2, E = 6.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sHELRTPL+aI+g++ ++l+ +d++ ++ q
CP000686_1 617 LKGQFLAAVSHELRTPLNAIIGFSTVMLD------EIDGPVTPLQ-- 655

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++i r ++ ll+Li+dlLdl+rieag
CP000686_1 656 ----------REDLKIINRNGRFLLHLIDDLLDLARIEAG 685

CP000686_0400: domain 1 of 1, from 458 to 524: score 87.5, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl+ +sHELRTPLt+I+gy+elLl+ e s+ +r
CP000686_0 458 LKSEFLSIISHELRTPLTSIMGYTELLLA---------REFSPAER- 494

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++t+++ea++l ++++dlL +r+eag
CP000686_0 495 ----------REFVQTVYNEANHLYQIVEDLLGVTRLEAG 524

CP000686_2280: domain 1 of 1, from 741 to 807: score 86.6, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+n+sHELRTPL++I+gya++L+ d+ ++ q
CP000686_2 741 AKSIFLSNISHELRTPLNSILGYAQILQV--------DQRINDHQ-- 777

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i+ ++e+ll+LindlLdl++ eag
CP000686_2 778 ----------RKGLHIIQASGEHLLSLINDLLDLAKVEAG 807

CP000686_1997: domain 1 of 1, from 259 to 326: score 83.9, E = 2.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLta++g++e+L + +++ ++q+l
CP000686_1 259 TQRRFIADVSHELRTPLTAMQGNLEVLAR---------GAARDPQLL 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ ++re+ rl r++ndlL l+r +ag
CP000686_1 297 ----------NESLDDMRREVARLIRMVNDLLLLARSDAG 326

CP000686_3523: domain 1 of 1, from 308 to 376: score 79.8, E = 3.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+gy++lL e+ + ++ ++
CP000686_3 308 AKSMFLATMSHELRTPLNAILGYVQLLHLEA-------HMRGRSEM- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i++++++ll +i+++Ld+s+ie+g
CP000686_3 347 ----------LPDLERIRSAGKHLLTIISNILDFSKIEQG 376

CP000686_3728: domain 1 of 1, from 152 to 217: score 77.8, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++an+sHELRTPL+++++++e+L+ ++ ++
CP000686_3 152 ARRDLVANVSHELRTPLASMKLLVETLQS---------DPPPPVA-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i +e++ + +L+++l +l++ie+g
CP000686_3 188 ----------KRMLDQIAQEVDAITQLVEELHELAQIESG 217

CP000686_3786: domain 1 of 1, from 503 to 571: score 77.8, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPLt+I+gya+l+ + +++e +
CP000686_3 503 TKSRFLANMSHELRTPLTTIIGYADLITISV-----HSGEFDQVA-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++++ll++indlLdls+ieag
CP000686_3 543 -----------SDIARVRDAGKHLLAIINDLLDLSKIEAG 571

CP000686_1568: domain 1 of 1, from 658 to 726: score 76.6, E = 2.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sHELR PLt+I gy++lLl+++ +els eq
CP000686_1 658 AKTDFIATISHELRSPLTVIYGYTDLLLRGM------VGELSGEQ-- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le +++ +e ++++++++ + iea+
CP000686_1 697 ----------RDLLEAVRNRVELMNNIVRNVIMVASIEAN 726

CP000686_1268: domain 1 of 1, from 169 to 237: score 75.1, E = 6.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla+lsHELRTPLtaI+gy+el +++++ + l++ q
CP000686_1 169 LKSTFLATLSHELRTPLTAILGYLELFERRAF------GLLTDVQ-- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i r a+ l+r++n+lL l +++
CP000686_1 208 ----------GQAIGVIARNARILSRILNNLLYLQEVRSN 237

CP000686_0592: domain 1 of 1, from 239 to 306: score 73.2, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELR PLt Ir+ ae++l++l ++ ++q
CP000686_0 239 RQQRFIASASHELRAPLTLIRASAEVALRDL-------PPDESDQ-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ +l e+++++rL++dlL+l+r+++g
CP000686_0 277 ----------RALLHDVLAESDHMRRLVDDLLTLTRLDSG 306

CP000686_0775: domain 1 of 1, from 132 to 196: score 71.8, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ n++HELRTPL+++ gy+e Ll+ + l+ +
CP000686_0 132 QRITLIGNVAHELRTPLAGLEGYLEGLLD---------GVLPGDP-- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++e++rl++L++dl lsr eag
CP000686_0 168 -----------ETIHAMQHEVRRLRKLVDDLQHLSRVEAG 196

CP000686_0189: domain 1 of 1, from 290 to 358: score 70.5, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sHELRTP++ I+gyae+L + +d+++++ ++
CP000686_0 290 MQNTFISVISHELRTPVSIIKGYAETLAR-------QDAAWDAATL- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i++ea+rl ++in lL+ sr+++
CP000686_0 329 ----------REGLMVIIEEADRLAQQINTLLEASRLQTD 358

CP000686_2336: domain 1 of 1, from 375 to 443: score 70.0, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHE+RTPLtaI gy++lL+++ + +s q+
CP000686_2 375 VKSAFLAHMSHEIRTPLTAIAGYCHLLETGI-------ERQSLAQT- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i+ ++ +ll+L n++L++++ie+g
CP000686_2 414 ----------RADLEAIRVATGHLLDLANNVLEMAQIESG 443

CP000686_3106: domain 1 of 1, from 345 to 410: score 69.0, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ ++ H+L++PLta++g++elL + +el+++q
CP000686_3 345 NVTLLAQMVIHDLKNPLTALIGFLELLST---------GELNDPQ-- 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e++lr ++ l L++dlLdl+r +g
CP000686_3 381 ----------RALIESALRTGRNLAGLVDDLLDLARYNEG 410

CP000686_2947: domain 1 of 1, from 433 to 499: score 67.8, E = 7.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE ++PLt+I+gy++l+l+ d+ l++
CP000686_2 433 AIGQLVAGVAHEVNNPLTSISGYTQLMLR--------DASLPSAI-- 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i +aer r++++lL ++r +
CP000686_2 470 ----------REDLQHINTQAERAARIVQNLLMFAREHKP 499

CP000686_1567: domain 1 of 1, from 469 to 537: score 67.0, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++l H+LR PLt+I+ + +L++ ++ ++ +e+q
CP000686_1 469 LREDYTSMLVHDLRAPLTSIMNGVMMLQR------GIVGPVTEQQ-- 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++ ++ +l+Lin lLd+s++e+g
CP000686_1 508 ----------QELLKIAYQGSQTMLHLINTLLDISKMEQG 537

CP000686_3401: domain 1 of 1, from 227 to 291: score 66.5, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+LRTPL+ +rgy+e L+e + s
CP000686_3 227 ARRQMTADLAHDLRTPLSILRGYTEGLQE---------GRISGSP-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ e+e+l+rLi+dl+ ls ++ag
CP000686_3 263 -----------TIYQIMHGEVEHLQRLIDDLRLLSLADAG 291

CP000686_3647: domain 1 of 1, from 238 to 302: score 66.4, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HELRTPL++I+g++ +Ll++++ +l ++
CP000686_3 238 ARRRLIADIAHELRTPLSVIQGNLRALLDDVF-------PLEKKE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ti++e+ l+rL+ dl++l+ +eag
CP000686_3 276 -------------IATIYDETLLLSRLVADLRELTLAEAG 302

CP000686_0501: domain 1 of 1, from 311 to 375: score 65.6, E = 3.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+a +sHELRTPL+ ++gy+ + +++++ q
CP000686_0 311 LKSEFIAIASHELRTPLSIVLGYTMMVRDQVE----------GSQ-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++ ++a+r+ ++++d+ l i++g
CP000686_0 346 ----------RDYLQRVMESAQRIKAIVDDMVNLHYIDTG 375

CP000686_0224: domain 1 of 1, from 482 to 546: score 64.4, E = 7.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HEL++PLta++g+a +L+e +++e
CP000686_0 482 AVGELVAGVAHELNNPLTAVLGFAGILQE----------VAPAEY-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i ++a r +r++++lL+++r ++
CP000686_0 517 ----------QHDLTMIVESATRARRIVQNLLTFARQREA 546

CP000686_0465: domain 1 of 1, from 790 to 858: score 63.8, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ ++ H+LR PL+++++ +el+ +++ ++l+++q
CP000686_0 790 MRHDLTHMIVHDLRSPLSGVMASIELMMRGV------PGKLNDQQ-- 828

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+++ +a +l++in lLd+sr+eag
CP000686_0 829 ----------RHVLQIASTSAANMLDMINTLLDISRLEAG 858

CP000686_3274: domain 1 of 1, from 181 to 249: score 63.2, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sHELR PL + g+++lL++++ +++ +e++
CP000686_3 181 ELQQFTSVVSHELREPLRMVTGFLDLLQRRY-------GDQLDEHA- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ +++ a r+++Li+ lL ++r+++
CP000686_3 220 ----------REYVSFAYDGAARMQSLIEKLLAYARLDQH 249

CP000686_0110: domain 1 of 1, from 147 to 211: score 61.2, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a+++HELRTPLt+I gy e Ll+++ +++eq+
CP000686_0 147 RRLALIADVAHELRTPLTTIEGYMEGLLDGV--------IAPDEQT- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ea rl+rL ++l lsr+eag
CP000686_0 185 -------------FTLIRHEAARLRRLTEELGLLSRAEAG 211

CP000686_1564: domain 1 of 1, from 504 to 574: score 60.9, E = 7.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla ++HELR PL+a+r ya+lL + +++ ++ e+
CP000686_1 504 AKDDFLAVAAHELRSPLAAVRSYADLLIR-------REQRRDKED-T 542

peLR.ledpeyreyletilreaerllrLindlLdlsrieag<-*
+eLR+l ++ +++ ++lrL+++lLd+sr++ag
CP000686_1 543 TELRgL---------TILSQQVSHMLRLVDNLLDMSRLDAG 574

CP000686_4371: domain 1 of 1, from 490 to 558: score 60.5, E = 9.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f++++sHELR+PL+++ g+++l l + ++l++ q
CP000686_4 490 ARMDFISMVSHELRNPLHTLNGFVKLVLQ------ERAGPLTSLQ-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ +++++e+l++ + +lL++ r ag
CP000686_4 529 ----------QDFLKMADEQIEQLSSRVAELLEYNRFKAG 558

CP000686_2559: domain 1 of 1, from 187 to 254: score 57.0, E = 8.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++HELRTPL+a+r+ +e+ + + + ++ ++
CP000686_2 187 QQGRFIADAAHELRTPLAALRTSVEVVQSN--------SQATVDE-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr ++ t++r++ rl+rL+ +lL l+ ++
CP000686_2 224 ---------YRAMTATLERALIRLERLVGNLLILASSDER 254

CP000686_4061: domain 1 of 1, from 283 to 349: score 55.7, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE +PL aI+g++ l le + ++e +
CP000686_4 283 AIGHLAASIAHEVGNPLQAIQGFLALFLE---------QCAPETPN- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +++e+er+ r +++l+dl r +a
CP000686_4 320 ----------QHFLRLAEEEIERIVRVLERLRDLYRPRAD 349

CP000686_0306: domain 1 of 1, from 167 to 231: score 55.0, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a+++HEL++PL+ I+g+aelL ++e+
CP000686_0 167 ALGEIVAGVAHELNNPLAIILGNAELLSP----------QHDPED-- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++a+r +r ++ l +++r +
CP000686_0 202 ----------QRSVAQIIESAKRARRVVQSLATFARRGPM 231

CP000686_1970: domain 1 of 1, from 887 to 952: score 52.3, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HEL++PL++I+g+++l + ++ ++
CP000686_1 887 ALGRLVAGAAHELNNPLAVILGLSQLQMD---------EDIPPSI-- 922

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i+r+a+r +++ +l+ + + ++
CP000686_1 923 ----------RADLEQIERAARRAAAIVHQLRAFGQPRTL 952

CP000686_3940: domain 1 of 1, from 668 to 734: score 49.2, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ Lt+I+g a+l+l+ ++ +
CP000686_3 668 SVGRLAGGIAHDFNNILTVISGSADLALA---------MMPPDSPA- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ti++ a+r +L+++lL ++r + g
CP000686_3 705 ----------YADVQTIQQGARRAANLVRQLLAFARRQPG 734

CP000686_0201: domain 1 of 1, from 204 to 270: score 47.9, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+l+HE+++PL aI ++ lL+ +ls+e+r
CP000686_0 204 LIGRLTAALAHEINNPLQAIANTLYLLQH---------RPLSDEKR- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +++e+er + ++++Ldl r +
CP000686_0 241 ----------QRYLGMAQQETERVIASVRRMLDLYRSSGQ 270

CP000686_2299: domain 1 of 1, from 424 to 489: score 47.7, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HE+++ L +++gyael + + s+e+
CP000686_2 424 AVGTFAAGIGHEFNNLLGGMLGYAELGRS---------ASDSAEK-- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i+++ +r +++ + lL+++r +
CP000686_2 460 ----------DQALDVIRQACQRGRSIMRGLLTFARRSEH 489

CP000686_2982: domain 1 of 1, from 462 to 530: score 47.5, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL +I+g++ L+ + + + + +
CP000686_2 462 ELERFTYTVSHDLKSPLITIQGFLGYLEQDI-------RNGDTDRA- 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +a+r+++L++dlL+lsri+
CP000686_2 501 ----------LSDIRRISAAARRMEHLLQDLLELSRIGRV 530

CP000686_1843: domain 1 of 1, from 263 to 329: score 43.9, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PL a r + l + d + +++q
CP000686_1 263 AVGELAASVAHEINNPLYAARNSLYLVEQ--------DMPPDAPQ-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ++++e+ r+ r+i +++d+ r
CP000686_1 300 ----------RHFLTIAQNELGRIARIITRMRDFYRPARD 329

CP000686_2014: domain 1 of 1, from 254 to 317: score 42.9, E = 9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ ++ HELRTP+t+++++++lL + +e +
CP000686_2 254 LKDEFIEHVGHELRTPVTSLSLALQLLTR------------QPELM- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++++++++ +l+ L++++L + + ++
CP000686_2 288 ----------RELIHVVRNSILQLETLVDRVLLMDHALEE 317

CP000686_2240: domain 1 of 1, from 457 to 521: score 38.6, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE++TPL +I+ y+ lL+ s eq
CP000686_2 457 ASGRLAAAVAHEINTPLQSIQNYLYLLRS-----------SSIEQS- 491

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ + +e+ r + L+ +lLdl r +
CP000686_2 492 ----------TAFLDLASSEITRVSTLLHRLLDLHRPGDR 521

CP000686_2770: domain 1 of 1, from 253 to 314: score 27.3, E = 2.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +l+H++++ L++I+g++ l+l + +++++
CP000686_2 253 SMGTLAGGLAHDFNNLLSGILGNTNLALLN--------IPADAPA-- 289

peLRledpeyreyletilreaerllrLindlLdls<-*
r yle ++ +a+r ++ +++L ++
CP000686_2 290 ----------RAYLEQVEIAAQRAAEITRQILAYT 314


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 39 3|*==
-12 138 103|=======*==
-11 320 535|======================= *
-10 687 993|================================================== *
-9 824 1025|==========================================================*
-8 816 767|======================================================*====
-7 629 484|==================================*==========
-6 396 278|===================*=========
-5 259 152|==========*========
-4 143 81|=====*=====
-3 84 43|===*==
-2 59 22|=*===
-1 34 11|*==
0 12 6|*
1 11 3|*
2 6 1|*
3 4 0|=
> 4 49 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 591.8502
P(chi-square) = 0

Total sequences searched: 4517

Whole sequence top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: