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Thermotogae
Classification of phyla is from NCBI page
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14 projects found  

1 accessions found for Dehalococcoides sp. BAV1  

Data for CP000688  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000688.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000688_0591 CDS_589423-586865 73.6 5.6e-21 1
CP000688_0231 CDS_240140-238395 73.3 6.8e-21 1
CP000688_0106 CDS_108308-107082 64.4 2.2e-18 1
CP000688_0893 CDS_890609-886821 63.5 4e-18 1
CP000688_0926 CDS_923017-924438 62.5 7.5e-18 1
CP000688_1092 CDS_1094586-1093402 61.8 1.2e-17 1
CP000688_0270 CDS_287914-284702 43.3 2.1e-12 1
CP000688_0174 CDS_175567-177360 37.3 1.1e-10 1
CP000688_0285 CDS_301930-300086 34.6 6.1e-10 1
CP000688_0122 CDS_120969-122270 32.1 3.1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000688_0591 1/1 632 697 .. 1 87 [] 73.6 5.6e-21
CP000688_0231 1/1 359 426 .. 1 87 [] 73.3 6.8e-21
CP000688_0106 1/1 165 230 .. 1 87 [] 64.4 2.2e-18
CP000688_0893 1/1 901 967 .. 1 87 [] 63.5 4e-18
CP000688_0926 1/1 246 310 .. 1 87 [] 62.5 7.5e-18
CP000688_1092 1/1 142 207 .. 1 87 [] 61.8 1.2e-17
CP000688_0270 1/1 847 912 .. 1 87 [] 43.3 2.1e-12
CP000688_0174 1/1 357 423 .. 1 87 [] 37.3 1.1e-10
CP000688_0285 1/1 550 604 .. 1 76 [. 34.6 6.1e-10
CP000688_0122 1/1 205 266 .. 1 83 [. 32.1 3.1e-09

Alignments of top-scoring domains:
CP000688_0591: domain 1 of 1, from 632 to 697: score 73.6, E = 5.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ a+l+HEL++PLt+++g++el++e l+e+
CP000688_0 632 SLGELSAGLAHELNNPLTSVIGFSELIQE---------KILPEDL-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i +ea+r ++i++lL+++r ++
CP000688_0 668 ----------RQDIQIISQEAQRAAEIIRNLLTFARRHEP 697

CP000688_0231: domain 1 of 1, from 359 to 426: score 73.3, E = 6.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTP+t++++++e+L+e +++s+++++
CP000688_0 359 VRRDFVANISHELRTPITSLKLLTETLQE---------GAASDPDVA 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+ e++ l +L+ +l dls ie+g
CP000688_0 397 ----------AGFIDKIHLEVDKLAQLVTELSDLSAIESG 426

CP000688_0106: domain 1 of 1, from 165 to 230: score 64.4, E = 2.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+++l+HEL+TPLt+I+++ el+ + + ls+e
CP000688_0 165 QRLEFTRALAHELKTPLTVIQAANELMGT---------QILSPEL-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i r +++l++ +n+lLdl++ e g
CP000688_0 201 ----------TNISDSIARGVQSLQKRVNELLDLAKGEVG 230

CP000688_0893: domain 1 of 1, from 901 to 967: score 63.5, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g+a++L e +++l+++
CP000688_0 901 AVGEMAAGIAHEINNPLTGVIGFASILME--------REDLPADV-- 937

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i + ++r +++ ++L+++r +
CP000688_0 938 ----------MDELQIINSGSQRVVEIVKRMLTFARQAKP 967

CP000688_0926: domain 1 of 1, from 246 to 310: score 62.5, E = 7.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la+++HELRTPLt+I g+++ +l+ + +++
CP000688_0 246 SRQRLLADIAHELRTPLTVIEGTVDGMLD---------GVFAADT-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ti++e+ l rLi dl+d+s +e+g
CP000688_0 282 -----------HHLTTIKEESATLTRLIKDLRDISLAESG 310

CP000688_1092: domain 1 of 1, from 142 to 207: score 61.8, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE++ PLt+I+g++e L + seeq
CP000688_1 142 SVGALTAGVAHEINSPLTSILGFSERLAR---------KCTSEEQ-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ea r + +n+l++++r ++
CP000688_1 178 ----------HRDIERIHTEALRAAKVVNNLRTFARSYEQ 207

CP000688_0270: domain 1 of 1, from 847 to 912: score 43.3, E = 2.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++l HEL+TPLt+++ +el e++ e
CP000688_0 847 NRAKFTRALVHELKTPLTSLSISSELFTG----------EATNEP-- 881

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i+r++ l++ +++Ldl+r e+g
CP000688_0 882 ---------FVSLSRSIERSVTNLSKRCDEMLDLARGETG 912

CP000688_0174: domain 1 of 1, from 357 to 423: score 37.3, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l +l HE+RTPLt +++++++L + +e++ e
CP000688_0 357 KRQAHLKALVHEIRTPLTPLLAASDALVN--------VSEKGTEL-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ ae l++ i dl +l+r g
CP000688_0 394 ----------YNLASSIREGAETLNSRIHDLIELERGKIG 423

CP000688_0285: domain 1 of 1, from 550 to 604: score 34.6, E = 6.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+++l HEL+TPLt I+g++ +L + + +ee
CP000688_0 550 QRIEFTRALVHELKTPLTPILGASAMLAN----------NFTEEP-- 584

peLRledpeyreyletilreaerllrLin<-*
++ + i++ a++l++ ++
CP000688_0 585 ---------WHSIALNIENGAQHLNKRVD 604

CP000688_0122: domain 1 of 1, from 205 to 266: score 32.1, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef++ + H+L+TPLt+I+ + +L + + + +
CP000688_0 205 SRLEFTRIVVHDLKTPLTSIISSSGVLSN----------IAADGK-- 239

peLRledpeyreyletilreaerllrLindlLdlsr<-*
y+ + + i++++ l+ +++lLd+++
CP000688_0 240 ---------YKALASNIYESTMNLNIRLDELLDMAQ 266


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 25 1|*====
-12 82 31|======*==========
-11 169 162|================================*=
-10 240 301|================================================ *
-9 254 311|=================================================== *
-8 225 233|============================================= *
-7 145 146|=============================*
-6 84 84|================*
-5 66 46|=========*====
-4 27 24|====*=
-3 11 13|==*
-2 14 6|=*=
-1 7 3|*=
0 3 1|*
> 1 13 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 121.7933
P(chi-square) = 2.188e-21

Total sequences searched: 1371

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: