hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000691.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000691_0022 CDS_26086-28689 67.1 2.1e-20 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000691_0022 1/1 641 709 .. 1 87 [] 67.1 2.1e-20
Alignments of top-scoring domains:
CP000691_0022: domain 1 of 1, from 641 to 709: score 67.1, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLtaIrg+ae+L e d+el+e +r
CP000691_0 641 LRTALLSSLSHDLRTPLTAIRGAAETLAE-------ADGELPEATR- 679
peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +i +++ r+ r + ++ ++rie+g
CP000691_0 680 ----------RDLLASIVEDVGRMTRFLANITGMARIETG 709
Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 2 1|*=
-11 11 9|========*==
-10 10 16|========== *
-9 13 17|============= *
-8 13 13|============*
-7 12 8|=======*====
-6 7 4|===*===
-5 2 2|=*
-4 3 1|*==
-3 1 0|=
-2 1 0|=
> -1 2 -|==
% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 6.0775
P(chi-square) = 0.1934
Total sequences searched: 77
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
