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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

9 accessions found for Acidiphilium cryptum JF-5  

Data for CP000697  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000697.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000697_1514 CDS_1697440-1698819 83.3 2.2e-23 1
CP000697_1856 CDS_2076883-2075234 74.1 8.9e-21 1
CP000697_0705 CDS_796432-799035 67.1 8.5e-19 1
CP000697_2004 CDS_2228843-2229988 55.1 2.1e-15 1
CP000697_2006 CDS_2231456-2233678 44.5 2.2e-12 1
CP000697_0755 CDS_856538-854832 41.6 1.4e-11 1
CP000697_0843 CDS_940307-941632 39.1 7.1e-11 1
CP000697_0573 CDS_651299-649401 37.8 1.7e-10 1
CP000697_0310 CDS_362971-364380 33.7 2.5e-09 1
CP000697_2147 CDS_2404961-2403597 30.2 2.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000697_1514 1/1 213 280 .. 1 87 [] 83.3 2.2e-23
CP000697_1856 1/1 322 387 .. 1 87 [] 74.1 8.9e-21
CP000697_0705 1/1 641 709 .. 1 87 [] 67.1 8.5e-19
CP000697_2004 1/1 147 206 .. 1 82 [. 55.1 2.1e-15
CP000697_2006 1/1 513 584 .. 1 87 [] 44.5 2.2e-12
CP000697_0755 1/1 184 252 .. 1 87 [] 41.6 1.4e-11
CP000697_0843 1/1 242 301 .. 1 87 [] 39.1 7.1e-11
CP000697_0573 1/1 259 324 .. 1 87 [] 37.8 1.7e-10
CP000697_0310 1/1 240 305 .. 1 87 [] 33.7 2.5e-09
CP000697_2147 1/1 244 302 .. 1 87 [] 30.2 2.4e-08

Alignments of top-scoring domains:
CP000697_1514: domain 1 of 1, from 213 to 280: score 83.3, E = 2.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+++g++e+L+ ++l++ ++l
CP000697_1 213 MRADFVANASHELRTPLTSLIGFIETLRG---------PALGDAEAL 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++aer++r+i dlL lsrie
CP000697_1 251 ----------PRFLAIMAEQAERMQRIIADLLSLSRIEMT 280

CP000697_1856: domain 1 of 1, from 322 to 387: score 74.1, E = 8.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PL++Ir ++e+ ++ t+ ++
CP000697_1 322 AIERFAADVAHEIKNPLSSIRSAVETVRR---------TDDPARA-- 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i ++++rl+rLi+d+ d sr++++
CP000697_1 358 ----------ARLFDIISQDVRRLDRLISDISDSSRLDSE 387

CP000697_0705: domain 1 of 1, from 641 to 709: score 67.1, E = 8.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLtaIrg+ae+L e d+el+e +r
CP000697_0 641 LRTALLSSLSHDLRTPLTAIRGAAETLAE-------ADGELPEATR- 679

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l +i +++ r+ r + ++ ++rie+g
CP000697_0 680 ----------RDLLASIVEDVGRMTRFLANITGMARIETG 709

CP000697_2004: domain 1 of 1, from 147 to 206: score 55.1, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+HE ++PL++Irg+a+lL++ ++ +e+
CP000697_2 147 SITGMAAVLAHEVKNPLSGIRGAAQLLEA----------NAAPED-- 181

peLRledpeyreyletilreaerllrLindlLdls<-*
re+ i++e++r+++L++++ +s
CP000697_2 182 ----------RELAVLIRDEVDRIRELVERIEVFS 206

CP000697_2006: domain 1 of 1, from 513 to 584: score 44.5, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ a++ + + +
CP000697_2 513 AWADVARRIAHEIKNPLTPIQLSAERLKRRF----AREITSDKDS-- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +ti r + + r+++++ ++r+ ++
CP000697_2 554 ---------FTQCADTIVRHVGDIGRMVDEFSAFARMPQP 584

CP000697_0755: domain 1 of 1, from 184 to 252: score 41.6, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ ++sH++++ Lt+I+g++++L ++ + + +
CP000697_0 184 AIGQLTGGISHDFNNLLTGILGNLDMLATRIE------QGDHASA-- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ ++++a r L ++lL+++r +a
CP000697_0 223 ----------MSYLDGARSAASRAAGLTQRLLTFARRQAL 252

CP000697_0843: domain 1 of 1, from 242 to 301: score 39.1, E = 7.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+++ +L + ++
CP000697_0 242 QRTAMLAGVSHDLRTPLTRLRLAIAMLPP---------DIAD----- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ++rLi L+++r e
CP000697_0 275 -------------TDGMNDDVTEMERLIGLYLTFARGEGT 301

CP000697_0573: domain 1 of 1, from 259 to 324: score 37.8, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g++e+L+ + ++ e
CP000697_0 259 AVGQLTGGLAHDFNNLLAVISGNLEMLES---------HVAGGEA-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ ++er +L +lL + r ++
CP000697_0 295 ----------AELLAEARLATERGAELAARLLAFGRRQTL 324

CP000697_0310: domain 1 of 1, from 240 to 305: score 33.7, E = 2.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++H+LR PL+ +r ++el+l+ ++ ++
CP000697_0 240 NLGAVGNDIAHDLRSPLARLRETLELALR---------DPDPAAA-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++ l+L +L l++ie+g
CP000697_0 276 ----------GAAIAEAIAQVDGALALCGAILRLAQIETG 305

CP000697_2147: domain 1 of 1, from 244 to 302: score 30.2, E = 2.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++ H+LRTP+t +r+ ae L +
CP000697_2 244 DRTFLLTAIGHDLRTPITRLRLRAEFLDD------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+il +++ l++++ + r a+
CP000697_2 273 ----------DAQREKILADLDELEAMLTSTIAFGRDVAQ 302


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 2 0|=
-13 17 2|*=
-12 87 70|======*==
-11 256 363|========================== *
-10 479 673|================================================ *
-9 581 695|==========================================================*
-8 567 520|===================================================*=====
-7 421 328|================================*==========
-6 281 188|==================*==========
-5 155 103|==========*=====
-4 105 55|=====*=====
-3 44 29|==*==
-2 26 15|=*=
-1 14 8|*=
0 6 4|*
1 4 2|*
2 2 1|*
3 2 0|=
> 4 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 274.9654
P(chi-square) = 0

Total sequences searched: 3063

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: