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Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Sphingomonas wittichii RW1  

Data for CP000699  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000699.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000699_3548 CDS_3937982-3939232 80.1 2.8e-22 1
CP000699_1153 CDS_1311698-1314187 73.3 2.4e-20 2
CP000699_2658 CDS_2954970-2957366 69.8 2.4e-19 1
CP000699_2672 CDS_2973614-2975488 60.9 7.9e-17 1
CP000699_4397 CDS_4881860-4879968 60.6 9.2e-17 2
CP000699_1456 CDS_1614765-1612078 56.7 1.2e-15 1
CP000699_0693 CDS_766966-764732 52.1 2.4e-14 1
CP000699_0396 CDS_426847-425258 51.6 3.4e-14 1
CP000699_0247 CDS_255218-257524 50.0 9.4e-14 1
CP000699_1942 CDS_2191201-2192307 46.6 8.6e-13 1
CP000699_0244 CDS_251743-252864 45.1 2.3e-12 1
CP000699_4763 CDS_5283583-5284932 44.6 3.2e-12 1
CP000699_0508 CDS_556108-553697 44.0 4.6e-12 1
CP000699_4395 CDS_4879334-4877619 43.1 8.4e-12 1
CP000699_2932 CDS_3241165-3239810 41.4 2.6e-11 1
CP000699_3687 CDS_4080180-4079164 39.9 7.1e-11 1
CP000699_4482 CDS_4963351-4964697 38.1 2.2e-10 1
CP000699_3832 CDS_4247932-4246370 36.7 5.5e-10 1
CP000699_4690 CDS_5196938-5195061 35.7 1.1e-09 1
CP000699_4533 CDS_5026475-5028349 34.9 1.8e-09 1
CP000699_0265 CDS_279959-281854 31.9 1.3e-08 1
CP000699_1378 CDS_1531786-1533150 31.4 1.7e-08 1
CP000699_2132 CDS_2407966-2406536 30.8 2.6e-08 1
CP000699_2220 CDS_2491915-2490587 30.6 2.9e-08 1
CP000699_3873 CDS_4285313-4287298 29.6 5.6e-08 1
CP000699_2954 CDS_3261765-3263843 28.7 1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000699_3548 1/1 183 251 .. 1 87 [] 80.1 2.8e-22
CP000699_1153 1/2 351 419 .. 1 87 [] 73.2 2.6e-20
CP000699_2658 1/1 566 634 .. 1 87 [] 69.8 2.4e-19
CP000699_2672 1/1 120 185 .. 1 87 [] 60.9 7.9e-17
CP000699_4397 1/2 280 346 .. 1 87 [] 57.5 7e-16
CP000699_1456 1/1 664 729 .. 1 87 [] 56.7 1.2e-15
CP000699_0693 1/1 389 454 .. 1 87 [] 52.1 2.4e-14
CP000699_0396 1/1 302 367 .. 1 87 [] 51.6 3.4e-14
CP000699_0247 1/1 516 587 .. 1 87 [] 50.0 9.4e-14
CP000699_1942 1/1 136 200 .. 1 87 [] 46.6 8.6e-13
CP000699_0244 1/1 143 198 .. 1 78 [. 45.1 2.3e-12
CP000699_4763 1/1 233 298 .. 1 87 [] 44.6 3.2e-12
CP000699_0508 1/1 427 493 .. 1 87 [] 44.0 4.6e-12
CP000699_4395 1/1 209 275 .. 1 87 [] 43.1 8.4e-12
CP000699_2932 1/1 228 297 .. 1 87 [] 41.4 2.6e-11
CP000699_3687 1/1 132 189 .. 1 87 [] 39.9 7.1e-11
CP000699_4482 1/1 234 297 .. 1 87 [] 38.1 2.2e-10
CP000699_3832 1/1 156 222 .. 1 87 [] 36.7 5.5e-10
CP000699_4690 1/1 245 312 .. 1 87 [] 35.7 1.1e-09
CP000699_4533 1/1 391 459 .. 1 87 [] 34.9 1.8e-09
CP000699_0265 1/1 403 474 .. 1 87 [] 31.9 1.3e-08
CP000699_1378 1/1 235 299 .. 1 87 [] 31.4 1.7e-08
CP000699_2132 1/1 271 328 .. 1 87 [] 30.8 2.6e-08
CP000699_2220 1/1 232 284 .. 1 81 [. 30.6 2.9e-08
CP000699_3873 1/1 285 352 .. 1 87 [] 29.6 5.6e-08
CP000699_2954 1/1 462 528 .. 1 81 [. 28.7 1e-07

Alignments of top-scoring domains:
CP000699_3548: domain 1 of 1, from 183 to 251: score 80.1, E = 2.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++I+g++e+L e ++e+++
CP000699_3 183 MRVDFVANASHELRTPLATIIGFIETLGE----------GGGAEDTA 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l ++ ea+r+++L++dl lsriea
CP000699_3 220 IR--------QRFLGIMMGEAKRMQQLVDDLISLSRIEAD 251

CP000699_1153: domain 1 of 2, from 351 to 419: score 73.2, E = 2.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHELRTPLt++ g + lL+ ++ + l++e
CP000699_1 351 LKDDFISTVSHELRTPLTSVVGSLTLLRSGAA------GQLPAEA-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+++ ++rl rLind+Ld+ +i+ g
CP000699_1 390 ----------QRLAEIAETNSQRLIRLINDILDIDQIRKG 419

CP000699_2658: domain 1 of 1, from 566 to 634: score 69.8, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+an+s ELR PLt+I g+aelL ++ +e+++
CP000699_2 566 LKTAFVANMSYELRVPLTSIAGFAELLDGGYA------GEMPPIA-- 604

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ il ++ rl +L++d+Ldl++ ag
CP000699_2 605 ----------QEYVKAILASVGRLGSLVEDVLDLTQGAAG 634

CP000699_2672: domain 1 of 1, from 120 to 185: score 60.9, E = 7.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e+l +sHE+RTP++++++++++L++ ++l+
CP000699_2 120 TRAEMLEVVSHEIRTPMHGLLAAIDALRR---------EPLDGAR-- 155

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ ++a i+d+Ld+srie+g
CP000699_2 156 ----------QAQLASLNQAATTVMGVIDDMLDYSRIESG 185

CP000699_4397: domain 1 of 2, from 280 to 346: score 57.5, E = 7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ +++H++++ +t+Irg aelL++ ++l +e+r
CP000699_4 280 ALGELTGGIAHDFNNLMTVIRGSAELLQK---------EDLAPEKR- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + a+ +L lL + r ++
CP000699_4 317 ----------RRYVRAITETADKATALTTKLLAFGRRQSL 346

CP000699_1456: domain 1 of 1, from 664 to 729: score 56.7, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++ H+LRTPLt+Ir ++ L ++l + +
CP000699_1 664 LRAALLSSVGHDLRTPLTTIRSAIGELGQ---------SALAPTD-- 699

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++ e+erl+r + +lLd++r++ag
CP000699_1 700 ----------AAIVDALDGEVERLDRFVGNLLDMARAQAG 729

CP000699_0693: domain 1 of 1, from 389 to 454: score 52.1, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L + l ++
CP000699_0 389 SKTRFLAAASHDLLQPLNAARLFVAALGD---------RRLALPT-- 424

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ ++++ ++L++ lL++sr++ag
CP000699_0 425 ----------RALVSQTSTALDSVEDLLEALLEISRLDAG 454

CP000699_0396: domain 1 of 1, from 302 to 367: score 51.6, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HEL++PL+++r +++ L + ++ q
CP000699_0 302 ATEAFAADVTHELKNPLASLRSAVDSLGI---------VKEPALQ-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i++++ rl+rLi d+ + sr +a+
CP000699_0 338 ----------KQLIDVIRDDVGRLDRLITDIAEASRVDAE 367

CP000699_0247: domain 1 of 1, from 516 to 587: score 50.0, E = 9.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ g + +s++ +
CP000699_0 516 AWADVARRIAHEIKNPLTPIQLAAERLQRRY-----GKEIQSDPGV- 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ti r++ ++r+++++ ++r+ +
CP000699_0 557 ---------FERLTATIVRQVGDMRRIVDEFSSFARMPKP 587

CP000699_1942: domain 1 of 1, from 136 to 200: score 46.6, E = 8.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ a+++HELRTP+t ++g ++ L + + ++
CP000699_1 136 AVMRWNASIAHELRTPVTILSGRLQGLAD---------GVFQPDP-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++ ++e l rLi+dl++ s e g
CP000699_1 172 -----------PLLRSLVTQVEALTRLIEDLRTVSLFEGG 200

CP000699_0244: domain 1 of 1, from 143 to 198: score 45.1, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+a+l+HE ++PL+a+rg+a+lL++ ++ee
CP000699_0 143 TAVAAAAMLAHEVKNPLSAVRGAAQLLET----------SCDEES-- 177

peLRledpeyreyletilreaerllrLindl<-*
r +++ i++e++r +Li+++
CP000699_0 178 ----------RPLTRLIREEVDRVAALIDRM 198

CP000699_4763: domain 1 of 1, from 233 to 298: score 44.6, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+H+LR PLt +r ++e +l+ + +ee
CP000699_4 233 ELKIATDGLAHDLRSPLTRLRSTLERALD---------ASEGEEA-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ++++e++rll +++ L +sr+eag
CP000699_4 269 ----------RGAVARAIDEGDRLLTMLDTALRISRAEAG 298

CP000699_0508: domain 1 of 1, from 427 to 493: score 44.0, E = 4.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++l+ + ++ ++ +
CP000699_0 427 AVGQLAGGVAHDFNNILTAIIGHCDLMTM--------RHIPGDSD-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++ ++r +L ++lL +sr ++
CP000699_0 464 ----------YDDIQQIKHNSNRAAALTRQLLAFSRQQTL 493

CP000699_4395: domain 1 of 1, from 209 to 275: score 43.1, E = 8.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ n++H++++ Lt I g ++l+l ++ +l+e
CP000699_4 209 TIGQLTGNVAHDFNNLLTPIVGSLDLILSGM--------PLDERV-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++a+r + L+++lL ++r +
CP000699_4 246 ----------LRTVKVAMDAADRARLLVDRLLAFARRQPL 275

CP000699_2932: domain 1 of 1, from 228 to 297: score 41.4, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s +++H+LRTPL+ +rg +++L ++d + +++ +
CP000699_2 228 EISNVSNDIAHDLRTPLARLRGRLQALAQRAD------GGTPPPAI- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e ++ e++ ll++ +L ++ ie g
CP000699_2 268 ----------AAEIEAAIAESDTLLAMFAAILRIAEIEGG 297

CP000699_3687: domain 1 of 1, from 132 to 189: score 39.9, E = 7.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++HELRTPL+ +++ ++ l+
CP000699_3 132 RQEAFAADVAHELRTPLALLSLELDR-LD------------------ 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++ +++rLi++l+ l++i+a
CP000699_3 160 ----------HEDAARLKNDVASMRRLIDQLMLLAQIDAA 189

CP000699_4482: domain 1 of 1, from 234 to 297: score 38.1, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++HE+RTPL+ +r+ +e +l ++e ++++
CP000699_4 234 SVRRVSDSVAHEMRTPLARLRASLEDALV--------SGEGDAPK-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l eaerl ++ + +L ++r+e+g
CP000699_4 271 -------------VAEALAEAERLGAIFDAVLRIARLETG 297

CP000699_3832: domain 1 of 1, from 156 to 222: score 36.7, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g ++l+ + + ++e +
CP000699_3 156 AMGQLTGGIAHDFNNLLQVVSGSLDLINN---------RAGGDERI- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++er +rL ++lL +sri+
CP000699_3 193 ----------QHLCGAAISAIERGRRLTSQLLSFSRIQRI 222

CP000699_4690: domain 1 of 1, from 245 to 312: score 35.7, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+ ++g ++l+++ + + ++e +
CP000699_4 245 SIGQLTGGIAHDFNNMLAIVIGSLDLARR--------RLTGDPERL- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ + + aer +L ++lL +sr +
CP000699_4 283 ----------ARNIDNAFEGAERAAALTSRLLAFSRQQPL 312

CP000699_4533: domain 1 of 1, from 391 to 459: score 34.9, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l++l HELRTPL+aI+g++e+++ + +++ ++
CP000699_4 391 GLNDSLRHLVHELRTPLNAIIGFSEMIEG---------QMRGPAAAA 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr + il++++ ll ++dl + +++
CP000699_4 429 ---------YRGRAQEILDQSKKLLGAVEDLDMVAAARTA 459

CP000699_0265: domain 1 of 1, from 403 to 474: score 31.9, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++++l+HEL++P+ta+ y+e+ ++ + ++++++ +
CP000699_0 403 AMGTMASTLAHELNQPITAVVNYVETVRD-----MLVEPKAGDLPV- 443

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re+l +ea r +++++l+++ +
CP000699_0 444 ---------IREALAESASEAMRAGQIVRRLREYVARGDV 474

CP000699_1378: domain 1 of 1, from 235 to 299: score 31.4, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++H+LRTPL+ +r+ ++++++ ++++e+
CP000699_1 235 GLRAASDHIAHDLRTPLARVRARLSTMED----------AADPET-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ e++rl + n lL+l ie+
CP000699_1 270 ----------ATQAARAAAELDRLMAAFNALLELREIESD 299

CP000699_2132: domain 1 of 1, from 271 to 328: score 30.8, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H+LRTPL+ I + +e + +
CP000699_2 271 ERTNMIGAIAHDLRTPLARIAFRIEGAPD------------------ 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e+++ ++e+++++i + r
CP000699_2 300 -----------EMREKVQADIEQMRAMIAATISFVRDTGS 328

CP000699_2220: domain 1 of 1, from 232 to 284: score 30.6, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++ H+LRTP++ +r+ ++++ +
CP000699_2 232 DRTQALAAVGHDLRTPIARLRLRIDMIGD------------------ 260

peLRledpeyreyletilreaerllrLindlLdl<-*
+ + ++r+a ++++i lL +
CP000699_2 261 ----------GAARDAMQRDAIEMEAMIGSLLAF 284

CP000699_3873: domain 1 of 1, from 285 to 352: score 29.6, E = 5.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L+++ g ++l++++ + +++e
CP000699_3 285 AVGQLTGGIAHDFNNMLAVVVGGLDLARRKI-------AQRPAEA-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + + a+r +L ++lL ++r+e
CP000699_3 323 ----------GVHLDGAMEGADRAAALTRRLLSFARAEPL 352

CP000699_2954: domain 1 of 1, from 462 to 528: score 28.7, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +l+HEL +PL+aI ++ + ++++r
CP000699_2 462 MMGEMAGALAHELSQPLSAIVNFLGAVDL---------MLDGDDERV 499

peLRledpeyreyletilreaerllrLindlLdl<-*
+ +Rl r++l+++ ++a r ++i++l+ +
CP000699_2 500 DIARL-----RQALQRASEQASRAGEIIRRLRAF 528


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 5 0|=
-13 36 3|*==
-12 136 110|======*=
-11 350 574|===================== *
-10 743 1066|============================================ *
-9 957 1101|========================================================= *
-8 936 824|================================================*=======
-7 695 519|==============================*==========
-6 435 299|=================*========
-5 265 164|=========*======
-4 133 87|=====*==
-3 70 46|==*==
-2 28 24|=*
-1 16 12|*
0 5 6|*
1 2 3|*
2 3 1|*
3 2 0|=
4 0 0|
5 2 0|=
6 0 0|
7 1 0|=
8 0 0|
9 1 0|=
> 10 29 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 445.8861
P(chi-square) = 0

Total sequences searched: 4850

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: