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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Sphingomonas wittichii RW1  

Data for CP000699  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000699.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000699_3898 CDS_4311547-4313085 65.0 3.2e-18 1
CP000699_3784 CDS_4185111-4186115 63.0 1.1e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000699_3898 1/1 323 369 .. 1 53 [. 65.0 3.2e-18
CP000699_3784 1/1 145 228 .. 1 94 [] 63.0 1.1e-17

Alignments of top-scoring domains:
CP000699_3898: domain 1 of 1, from 323 to 369: score 65.0, E = 3.2e-18
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQv+SSL++L+ar +++ + +a q+RV +
CP000699_3 323 EVHHRVKNNLQVVSSLINLHARGAEGAVA------DAYGAIQRRVDA 363

mAliHE<-*
A +H+
CP000699_3 364 LAVVHR 369

CP000699_3784: domain 1 of 1, from 145 to 228: score 63.0, E = 1.1e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NNLQv+ +LL LQ +++d ++ + aL+E+ +R +
CP000699_3 145 ELQHRVSNNLQVVGGLLALQMKSVSDAAA-----RLALEEASRRLAL 186

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+ iH++LY + +++d++ +le L ++L ++ g+ ++ + +
CP000699_3 187 IGRIHRQLYDPHG-EQLDLGRFLEQLGADLVDAGGRAGIVCR----V 228


Histogram of all scores:
score obs exp (one = represents 21 sequences)
----- --- ---
-15 2 0|=
-14 21 0|=
-13 61 30|=*=
-12 236 318|============ *
-11 1239 887|==========================================*================
-10 1128 1147|======================================================*
-9 799 969|======================================= *
-8 647 650|==============================*
-7 301 386|=============== *
-6 231 215|==========*
-5 86 115|=====*
-4 54 61|==*
-3 23 32|=*
-2 7 16|*
-1 9 8|*
0 0 4|*
1 1 2|*
> 2 5 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 259.2695
P(chi-square) = 0

Total sequences searched: 4850

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: