Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermotoga petrophila RKU-1  

Data for CP000702  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000702.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000702_1122 CDS_1159180-1160418 98.2 7.4e-28 1
CP000702_0074 CDS_67594-66113 85.0 4.1e-24 1
CP000702_1408 CDS_1415581-1413419 60.1 4.8e-17 1
CP000702_0513 CDS_514753-513536 55.8 7.9e-16 1
CP000702_1492 CDS_1499540-1500493 41.6 8.5e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000702_1122 1/1 185 252 .. 1 87 [] 98.2 7.4e-28
CP000702_0074 1/1 254 322 .. 1 87 [] 85.0 4.1e-24
CP000702_1408 1/1 502 568 .. 1 87 [] 60.1 4.8e-17
CP000702_0513 1/1 192 258 .. 1 87 [] 55.8 7.9e-16
CP000702_1492 1/1 104 169 .. 1 87 [] 41.6 8.5e-12

Alignments of top-scoring domains:
CP000702_1122: domain 1 of 1, from 185 to 252: score 98.2, E = 7.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a++sHELRTPLt+I gyae+Lle ++l ++++
CP000702_1 185 MRREFIATVSHELRTPLTSIHGYAETLLE---------DDLEDKEL- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++i++e+ r+ rLindlLdl+++e+
CP000702_1 222 ---------VKRFLKIIEEESARMTRLINDLLDLEKMEES 252

CP000702_0074: domain 1 of 1, from 254 to 322: score 85.0, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sHELRTPLtaI++yae++ + l +el+ ++
CP000702_0 254 MKTEFIANISHELRTPLTAIKAYAETIYNTL-------EELDLGTL- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le+i +++ +l++L+n+lLd+sr+e
CP000702_0 293 ----------KEFLEVIMDQSSHLENLLNELLDFSRLERK 322

CP000702_1408: domain 1 of 1, from 502 to 568: score 60.1, E = 4.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HE+R+P+t I g++ +++ + ++e++
CP000702_1 502 ILGEMTARVAHEIRNPITIIGGFIMRMKK---------HLDDPETL- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i +e+ rl+ ++ ++L++s+ ++
CP000702_1 539 ----------KKYVNIITNELSRLETIVKEILEYSKERQV 568

CP000702_0513: domain 1 of 1, from 192 to 258: score 55.8, E = 7.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f ++sHEL+TPL+++++ +++L+ +++l+++
CP000702_0 192 SLKRFSMDASHELKTPLSVLKTSLDVLKY--------REDLPDDV-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++++ ++ ++++in+lL l + e+
CP000702_0 229 ----------KSKLNVMEKNVDKMSKQINQLLLLVKSESS 258

CP000702_1492: domain 1 of 1, from 104 to 169: score 41.6, E = 8.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ ++sHEL TPL+a ++++ lL++ e ++e+
CP000702_1 104 AKLDFVTAVSHELFTPLSASKANVFLLKD---------IENDPEK-- 139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l +++r+++r++ +i++l l+ i+
CP000702_1 140 ----------LEILGKVERSLDRMETIIRQLKVLTMIQLR 169


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 3 0|=
-13 16 1|*==
-12 74 40|======*======
-11 179 211|============================== *
-10 319 392|====================================================== *
-9 342 405|========================================================= *
-8 288 303|================================================ *
-7 212 191|===============================*====
-6 119 110|==================*=
-5 90 60|=========*=====
-4 52 32|=====*===
-3 37 17|==*====
-2 23 8|=*==
-1 9 4|*=
0 4 2|*
1 2 1|*
2 2 0|=
3 1 0|=
4 5 0|=
5 1 0|=
6 1 0|=
> 7 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 131.2937
P(chi-square) = 2.544e-23

Total sequences searched: 1785

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: