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Classification of phyla is from NCBI page
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2 accessions found for Brucella ovis ATCC 25840  

Data for CP000708  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000708.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000708_0560 CDS_633076-630725 90.3 1.4e-25 1
CP000708_1422 CDS_1557363-1560470 89.7 2.2e-25 1
CP000708_0287 CDS_331028-332344 85.6 3.1e-24 1
CP000708_1846 CDS_2017741-2019510 72.5 1.6e-20 1
CP000708_1851 CDS_2023215-2025728 69.6 1e-19 1
CP000708_0525 CDS_591421-593250 63.3 6.3e-18 1
CP000708_0990 CDS_1099015-1097873 53.3 4.2e-15 1
CP000708_0557 CDS_623821-625224 48.8 8.3e-14 1
CP000708_0988 CDS_1096310-1093986 42.4 5.2e-12 1
CP000708_0118 CDS_149144-150436 40.1 2.4e-11 1
CP000708_0928 CDS_1013029-1015866 39.5 3.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000708_0560 1/1 543 612 .. 1 87 [] 90.3 1.4e-25
CP000708_1422 1/1 795 864 .. 1 87 [] 89.7 2.2e-25
CP000708_0287 1/1 200 267 .. 1 87 [] 85.6 3.1e-24
CP000708_1846 1/1 352 417 .. 1 87 [] 72.5 1.6e-20
CP000708_1851 1/1 605 673 .. 1 87 [] 69.6 1e-19
CP000708_0525 1/1 328 397 .. 1 87 [] 63.3 6.3e-18
CP000708_0990 1/1 135 199 .. 1 87 [] 53.3 4.2e-15
CP000708_0557 1/1 240 306 .. 1 87 [] 48.8 8.3e-14
CP000708_0988 1/1 525 596 .. 1 87 [] 42.4 5.2e-12
CP000708_0118 1/1 209 275 .. 1 87 [] 40.1 2.4e-11
CP000708_0928 1/1 567 633 .. 1 87 [] 39.5 3.6e-11

Alignments of top-scoring domains:
CP000708_0560: domain 1 of 1, from 543 to 612: score 90.3, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+++++ + ++l+++
CP000708_0 543 AKSEFLANMSHELRTPLNAIIGFSEMIQAGTF------GPLGSDR-- 581

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i+ +++ ll+ ind+Ld+s+ieag
CP000708_0 582 ---------YEEYINDIHTSGNFLLNVINDILDMSKIEAG 612

CP000708_1422: domain 1 of 1, from 795 to 864: score 89.7, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla +sHE+RTPL+aI+g++el+ + + ++ + +
CP000708_1 795 QKTEFLARISHEIRTPLNAIIGFSELMAD------EKFGPIGNDR-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+yl+ i r++++ l+L+ndlLd+s+ieag
CP000708_1 834 ---------YRDYLRDINRSGNHVLALVNDLLDISKIEAG 864

CP000708_0287: domain 1 of 1, from 200 to 267: score 85.6, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+L+ +++++ ++
CP000708_0 200 MRSDFIANASHELRTPLASLRGFIETLQG---------PARNDAAAR 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++++aer++rLi+dlL lsr+e
CP000708_0 238 ----------DRFLDIMQKQAERMSRLIDDLLSLSRLEMR 267

CP000708_1846: domain 1 of 1, from 352 to 417: score 72.5, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++e r
CP000708_1 352 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTDESR- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi d+ d sr++a+
CP000708_1 388 ----------KRLLDVIQHDVRRLDRLITDISDASRLDAE 417

CP000708_1851: domain 1 of 1, from 605 to 673: score 69.6, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g++elL++ + + l+e q
CP000708_1 605 IKNDFVQHVSYELRSPLTNIIGFTELLQT------PAFGSLNERQ-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i ++ ll ++nd+Ldl+ +ag
CP000708_1 644 ----------LEYLDHISTSSSVLLTIVNDILDLATVDAG 673

CP000708_0525: domain 1 of 1, from 328 to 397: score 63.3, E = 6.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+++la++sHELRTPL++I+g++++L + ++l ++ +
CP000708_0 328 GKGRLLATVSHELRTPLNSIIGFSDMLTH------EIGGKLASDRQ- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey i++++++ll+L+n +Ld sr+e+g
CP000708_0 368 ----------REYAGLIHQSGHYLLELVNAVLDNSRLETG 397

CP000708_0990: domain 1 of 1, from 135 to 199: score 53.3, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++l+HE+++PL++Irg+a+lL+ s+e+
CP000708_0 135 SVIGLASMLAHEIKNPLSGIRGAAQLLEQ----------VVSDED-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i +e++r+ +L++++ +s +
CP000708_0 170 ----------RALARLITEETDRIVSLVDRMEVFSDERPI 199

CP000708_0557: domain 1 of 1, from 240 to 306: score 48.8, E = 8.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae +l +e+ e++
CP000708_0 240 GLKQVSDNIAHDLKTPLTRLRNRAEEALG---------GEKVEPE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le i+ e+++l r n +L +sr+eag
CP000708_0 276 ---------YRAALEDIIGESDQLIRTFNAILMISRLEAG 306

CP000708_0988: domain 1 of 1, from 525 to 596: score 42.4, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ ++ + + e
CP000708_0 525 AWADVARRIAHEIKNPLTPIQLSAERIRRRY----GKVITEDREV-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
CP000708_0 566 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 596

CP000708_0118: domain 1 of 1, from 209 to 275: score 40.1, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I + ++ +++ +++++
CP000708_0 209 ALDGLAAAAAHELGTPLATIALVVKEMQR--------AHTKDPGL-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++r+++++++l ls +++
CP000708_0 246 ----------EEDIALLHSQTQRCREILQRLTSLSSEGEE 275

CP000708_0928: domain 1 of 1, from 567 to 633: score 39.5, E = 3.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl++ + +s++
CP000708_0 567 AVGQLAGGIAHDFNNVLTAIIMSSDLLLTN--------HRASDPS-- 603

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
CP000708_0 604 ----------FPDIMNIKQNANRAASLVRQLLAFSRRQTL 633


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 12 0|==
-13 32 1|*====
-12 105 44|======*========
-11 199 228|============================= *
-10 320 424|============================================== *
-9 386 438|======================================================== *
-8 313 328|============================================= *
-7 235 206|=============================*====
-6 145 119|================*====
-5 78 65|=========*==
-4 44 34|====*==
-3 19 18|==*
-2 11 9|=*
-1 8 5|*=
0 4 2|*
1 2 1|*
2 0 0|
3 1 0|=
> 4 15 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 136.7889
P(chi-square) = 7.32e-24

Total sequences searched: 1930

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: