Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
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2 accessions found for   

Data for CP000708  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000708.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000708_1468 CDS_1615647-1616960 95.8 2.2e-27 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000708_1468 1/1 223 310 .. 1 94 [] 95.8 2.2e-27

Alignments of top-scoring domains:
CP000708_1468: domain 1 of 1, from 223 to 310: score 95.8, E = 2.2e-27
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
+HR+ N+L+++SSLL LQ r+++de++ ++aL +++RV++
CP000708_1 223 DTNHRIGNSLATVSSLLGLQMRQTQDENA-----RAALVAARDRVQT 264

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+++ H++L +ed++t ++e+l+ ++++++++ g+++d i+++ D
CP000708_1 265 VSTAHRRLRLGEDMETARVDEFLQSVIGDIRSAIGHDRD-IRFETDF 310


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 11 0|==
-14 13 0|==
-13 40 12|=*===
-12 146 126|=============*===
-11 505 352|=======================================*=================
-10 427 456|================================================ *
-9 305 385|================================== *
-8 183 258|===================== *
-7 118 153|============== *
-6 96 85|=========*=
-5 37 46|=====*
-4 23 24|==*
-3 12 12|=*
-2 8 6|*
-1 4 3|*
> 0 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 185.7140
P(chi-square) = 6.766e-34

Total sequences searched: 1930

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: