Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Brucella ovis ATCC 25840  

Data for CP000709  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000709.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000709_0188 CDS_216684-215344 44.9 5.2e-13 1
CP000709_0034 CDS_37413-38426 30.9 4.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000709_0188 1/1 227 292 .. 1 87 [] 44.9 5.2e-13
CP000709_0034 1/1 110 180 .. 1 87 [] 30.9 4.7e-09

Alignments of top-scoring domains:
CP000709_0188: domain 1 of 1, from 227 to 292: score 44.9, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + ++++
CP000709_0 227 AERSFTANSAHELRTPIAAALAQTQRLIA---------ETQDKAA-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+ +++rl+rL + l++l+++e g
CP000709_0 263 ----------RDRGEQIEAALHRLSRLSEKLMQLAKAEGG 292

CP000709_0034: domain 1 of 1, from 110 to 180: score 30.9, E = 4.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++ HE +PL aI a++ +++l a++++ +e
CP000709_0 110 TLGQLTSSITHEVSQPLVAIEISASASRRWL----AQSPPNNERA-- 150

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i +++r +++++++ lsr e +
CP000709_0 151 ----------AAAIERISADSHRAIEILDRVRRLSRGEKP 180


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 2 0|=
-14 6 0|==
-13 10 0|===
-12 48 21|=====*======
-11 69 114|================== *
-10 135 211|================================== *
-9 215 218|======================================================*
-8 164 163|========================================*
-7 131 103|=========================*=======
-6 94 59|==============*=========
-5 29 32|=======*
-4 23 17|====*=
-3 15 9|==*=
-2 11 4|*==
-1 4 2|*
0 1 1|*
1 1 0|=
2 1 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 109.9829
P(chi-square) = 1.482e-19

Total sequences searched: 962

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: