Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Brucella ovis ATCC 25840  

Data for CP000709  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000709.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000709_0489 CDS_575049-576440 142.0 7.8e-49 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000709_0489 1/1 259 341 .. 1 85 [] 142.0 7.8e-49

Alignments of top-scoring domains:
CP000709_0489: domain 1 of 1, from 259 to 341: score 142.0, E = 7.8e-49
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
E HR+KN++A+VQSia+QTlRn+ +++++++ Fs RL+ALs+aHd+
CP000709_0 259 EIAHRFKNSMAMVQSIANQTLRNTYDPEQANRLFSERLRALSQAHDM 305

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L ++WagA++ ++++ +LaP+++ a Ri++sGP+
CP000709_0 306 --LLKENWAGATIQQICATALAPFNSTFANRIHMSGPH 341


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 4 0|==
-13 20 0|=======
-12 96 0|================================
-11 83 7|==*=========================
-10 166 99|================================*=======================
-9 172 246|==========================================================*
-8 152 255|=================================================== *
-7 102 171|================================== *
-6 63 93|===================== *
-5 54 46|===============*==
-4 22 22|=======*
-3 14 10|===*=
-2 6 4|=*
-1 4 2|*=
0 1 0|=
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 867.9856
P(chi-square) = 0

Total sequences searched: 962

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: