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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pseudomonas putida F1  

Data for CP000712  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000712.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000712_2826 CDS_3264515-3261579 114.6 5e-32 2
CP000712_4014 CDS_4584790-4587543 101.7 2.3e-28 1
CP000712_1674 CDS_1939857-1937926 91.8 1.5e-25 1
CP000712_4642 CDS_5265258-5268029 90.7 3.1e-25 1
CP000712_3787 CDS_4319674-4322031 89.1 8.6e-25 1
CP000712_3696 CDS_4197514-4200321 87.3 2.7e-24 1
CP000712_1965 CDS_2262767-2266234 84.5 1.7e-23 1
CP000712_5170 CDS_5870099-5871406 83.4 3.4e-23 1
CP000712_3698 CDS_4201596-4204808 82.9 5e-23 1
CP000712_1998 CDS_2299691-2301943 81.9 9.2e-23 1
CP000712_3586 CDS_4062917-4066549 75.1 8.1e-21 1
CP000712_2311 CDS_2684260-2680979 73.9 1.7e-20 1
CP000712_1689 CDS_1954047-1956701 73.6 2.1e-20 1
CP000712_0147 CDS_154122-152341 71.6 7.6e-20 1
CP000712_3532 CDS_3999297-4000646 70.8 1.3e-19 1
CP000712_0354 CDS_408564-410000 68.4 6.3e-19 1
CP000712_4247 CDS_4810512-4809133 66.5 2.1e-18 1
CP000712_4865 CDS_5525789-5526874 65.0 5.6e-18 1
CP000712_4600 CDS_5225037-5223049 63.9 1.2e-17 1
CP000712_0018 CDS_20038-21444 63.1 2e-17 1
CP000712_3972 CDS_4540396-4543875 61.3 6.3e-17 1
CP000712_1196 CDS_1375088-1376695 61.3 6.4e-17 1
CP000712_4231 CDS_4792750-4794132 60.8 8.7e-17 1
CP000712_2989 CDS_3423613-3422249 58.9 3.2e-16 2
CP000712_0042 CDS_45540-46958 58.4 4.2e-16 1
CP000712_0925 CDS_1066768-1068078 58.0 5.6e-16 1
CP000712_1387 CDS_1576601-1575261 58.0 5.6e-16 1
CP000712_2349 CDS_2723100-2724362 57.5 7.7e-16 1
CP000712_1475 CDS_1680484-1681701 57.3 8.7e-16 1
CP000712_0283 CDS_333018-331651 53.0 1.4e-14 1
CP000712_2134 CDS_2464964-2466901 52.9 1.5e-14 1
CP000712_2042 CDS_2357059-2354876 52.5 2.1e-14 1
CP000712_3030 CDS_3466079-3464409 51.8 3.2e-14 1
CP000712_4012 CDS_4583873-4582482 50.1 9.5e-14 1
CP000712_1618 CDS_1841901-1843223 49.6 1.3e-13 1
CP000712_1968 CDS_2267618-2268844 48.9 2.1e-13 1
CP000712_0558 CDS_633966-632638 46.7 8.9e-13 1
CP000712_2303 CDS_2671197-2672648 45.7 1.6e-12 2
CP000712_3290 CDS_3764003-3766390 43.6 6.8e-12 1
CP000712_2304 CDS_2672955-2674448 43.2 8.8e-12 1
CP000712_4503 CDS_5097333-5100308 42.6 1.3e-11 1
CP000712_0276 CDS_323289-321475 41.1 3.4e-11 1
CP000712_2191 CDS_2539495-2537834 40.9 4e-11 1
CP000712_0259 CDS_305126-306439 40.7 4.5e-11 1
CP000712_2294 CDS_2657536-2659599 39.1 1.2e-10 1
CP000712_2691 CDS_3111086-3109806 36.9 5.4e-10 1
CP000712_1901 CDS_2207123-2208283 36.7 5.8e-10 1
CP000712_2190 CDS_2537771-2535705 35.5 1.3e-09 1
CP000712_1092 CDS_1252472-1250568 34.4 2.8e-09 1
CP000712_4320 CDS_4891262-4893292 34.3 2.9e-09 1
CP000712_1035 CDS_1181463-1182917 33.9 3.6e-09 1
CP000712_4267 CDS_4832875-4834632 33.6 4.5e-09 1
CP000712_5228 CDS_5935032-5936309 33.3 5.7e-09 1
CP000712_3288 CDS_3761266-3763512 32.0 1.3e-08 1
CP000712_2295 CDS_2661222-2659606 31.2 2.2e-08 1
CP000712_1201 CDS_1380043-1381389 31.2 2.2e-08 1
CP000712_2278 CDS_2638313-2639611 29.5 6.7e-08 1
CP000712_2184 CDS_2528562-2529968 28.2 1.5e-07 1
CP000712_0910 CDS_1053086-1054342 26.9 3.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000712_4014 1/1 285 350 .. 1 87 [] 101.7 2.3e-28
CP000712_1674 1/1 264 329 .. 1 87 [] 91.8 1.5e-25
CP000712_4642 1/1 397 462 .. 1 87 [] 90.7 3.1e-25
CP000712_3787 1/1 305 370 .. 1 87 [] 89.1 8.6e-25
CP000712_3696 1/1 458 523 .. 1 87 [] 87.3 2.7e-24
CP000712_1965 1/1 486 554 .. 1 87 [] 84.5 1.7e-23
CP000712_5170 1/1 205 272 .. 1 87 [] 83.4 3.4e-23
CP000712_3698 1/1 480 545 .. 1 87 [] 82.9 5e-23
CP000712_1998 1/1 267 332 .. 1 87 [] 81.9 9.2e-23
CP000712_3586 1/1 710 776 .. 1 87 [] 75.1 8.1e-21
CP000712_2311 1/1 598 664 .. 1 87 [] 73.9 1.7e-20
CP000712_1689 1/1 651 719 .. 1 87 [] 73.6 2.1e-20
CP000712_0147 1/1 373 441 .. 1 87 [] 71.6 7.6e-20
CP000712_3532 1/1 231 297 .. 1 87 [] 70.8 1.3e-19
CP000712_0354 1/1 255 321 .. 1 87 [] 68.4 6.3e-19
CP000712_4247 1/1 244 309 .. 1 87 [] 66.5 2.1e-18
CP000712_4865 1/1 132 197 .. 1 87 [] 65.0 5.6e-18
CP000712_4600 1/1 418 483 .. 1 87 [] 63.9 1.2e-17
CP000712_0018 1/1 238 304 .. 1 87 [] 63.1 2e-17
CP000712_2826 1/2 180 247 .. 1 87 [] 63.0 2.1e-17
CP000712_3972 1/1 796 863 .. 1 87 [] 61.3 6.3e-17
CP000712_1196 1/1 308 373 .. 1 87 [] 61.3 6.4e-17
CP000712_4231 1/1 240 306 .. 1 87 [] 60.8 8.7e-17
CP000712_2989 2/2 237 302 .. 1 87 [] 58.6 3.7e-16
CP000712_0042 1/1 241 307 .. 1 87 [] 58.4 4.2e-16
CP000712_0925 1/1 211 277 .. 1 87 [] 58.0 5.6e-16
CP000712_1387 1/1 228 292 .. 1 87 [] 58.0 5.6e-16
CP000712_2349 1/1 201 263 .. 1 87 [] 57.5 7.7e-16
CP000712_1475 1/1 184 252 .. 1 87 [] 57.3 8.7e-16
CP000712_0283 1/1 253 311 .. 1 87 [] 53.0 1.4e-14
CP000712_2134 1/1 280 345 .. 1 87 [] 52.9 1.5e-14
CP000712_2042 1/1 361 427 .. 1 87 [] 52.5 2.1e-14
CP000712_3030 1/1 195 260 .. 1 87 [] 51.8 3.2e-14
CP000712_2826 2/2 750 820 .. 1 87 [] 51.6 3.5e-14
CP000712_4012 1/1 233 292 .. 1 87 [] 50.1 9.5e-14
CP000712_1618 1/1 224 288 .. 1 87 [] 49.6 1.3e-13
CP000712_1968 1/1 168 241 .. 1 87 [] 48.9 2.1e-13
CP000712_0558 1/1 232 291 .. 1 87 [] 46.7 8.9e-13
CP000712_2303 2/2 272 336 .. 1 87 [] 44.3 4.1e-12
CP000712_3290 1/1 427 495 .. 1 87 [] 43.6 6.8e-12
CP000712_2304 1/1 272 336 .. 1 87 [] 43.2 8.8e-12
CP000712_4503 1/1 756 822 .. 1 87 [] 42.6 1.3e-11
CP000712_0276 1/1 370 438 .. 1 87 [] 41.1 3.4e-11
CP000712_2191 1/1 173 241 .. 1 87 [] 40.9 4e-11
CP000712_0259 1/1 221 280 .. 1 87 [] 40.7 4.5e-11
CP000712_2294 1/1 317 385 .. 1 87 [] 39.1 1.2e-10
CP000712_2691 1/1 209 274 .. 1 87 [] 36.9 5.4e-10
CP000712_1901 1/1 153 218 .. 1 87 [] 36.7 5.8e-10
CP000712_2190 1/1 315 383 .. 1 87 [] 35.5 1.3e-09
CP000712_1092 1/1 408 476 .. 1 87 [] 34.4 2.8e-09
CP000712_4320 1/1 412 502 .. 1 87 [] 34.3 2.9e-09
CP000712_1035 1/1 282 325 .. 1 65 [. 33.9 3.6e-09
CP000712_4267 1/1 362 426 .. 1 83 [. 33.6 4.5e-09
CP000712_5228 1/1 221 262 .. 1 66 [. 33.3 5.7e-09
CP000712_3288 1/1 525 593 .. 1 87 [] 32.0 1.3e-08
CP000712_2295 1/1 171 239 .. 1 87 [] 31.2 2.2e-08
CP000712_1201 1/1 238 300 .. 1 87 [] 31.2 2.2e-08
CP000712_2278 1/1 212 276 .. 1 87 [] 29.5 6.7e-08
CP000712_2184 1/1 241 314 .. 1 87 [] 28.2 1.5e-07
CP000712_0910 1/1 203 268 .. 1 87 [] 26.9 3.6e-07

Alignments of top-scoring domains:
CP000712_4014: domain 1 of 1, from 285 to 350: score 101.7, E = 2.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ +e+++ q
CP000712_4 285 IKSEFLANMSHEIRTPLNGILGFTHLLQK---------SEMTPRQ-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll +in++Ld+s+ieag
CP000712_4 321 ----------LDYLNTIEKSADNLLGIINEILDFSKIEAG 350

CP000712_1674: domain 1 of 1, from 264 to 329: score 91.8, E = 1.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+++++g+++lL++ t+ls eq
CP000712_1 264 AKSDFLAMMSHELRTPMNGVLGMLQLLET---------TPLSNEQ-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ ++ +++ +ll+ ind+Ld+srie
CP000712_1 300 ----------ADYTAVASESTGHLLKVINDILDFSRIERA 329

CP000712_4642: domain 1 of 1, from 397 to 462: score 90.7, E = 3.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla +sHE+RTP+++++g++elLl t+ls +q
CP000712_4 397 AKAEFLAKISHEIRTPMNGVLGMTELLLG---------TPLSVKQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll Lin++Ld+s++e+
CP000712_4 433 ----------RDYVQTIHSAGNELLTLINEILDISKLESR 462

CP000712_3787: domain 1 of 1, from 305 to 370: score 89.1, E = 8.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTPL++++g++ l+l+ +l++eq
CP000712_3 305 ARAAFLANMSHEIRTPLNGMLGMIALALD---------NPLPSEQ-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++++++ l +L+nd+Ldls+ +ag
CP000712_3 341 ----------RQQLAIAHDSGKVLVELLNDILDLSKFDAG 370

CP000712_3696: domain 1 of 1, from 458 to 523: score 87.3, E = 2.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTPL +++g++elL + t l+++q
CP000712_3 458 AKTQFLATMSHEIRTPLYGVLGTLELLSR---------TVLDAQQ-- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ i+ ++ ll+Li d+Ld s+ieag
CP000712_3 494 ----------RDYLRAIEGSSSTLLQLICDVLDVSKIEAG 523

CP000712_1965: domain 1 of 1, from 486 to 554: score 84.5, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL e+++ ++lseeq
CP000712_1 486 YKSEFLANMSHELRTPLNSSLILAKLLAENGE------GNLSEEQ-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++ ll+Lind+Ld+++ eag
CP000712_1 525 ----------VKFAESIYSAGNDLLNLINDILDIAKVEAG 554

CP000712_5170: domain 1 of 1, from 205 to 272: score 83.4, E = 3.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Ll+++ ++ ++
CP000712_5 205 MRKDFVANVSHELRTPLTVITGYLETLLDNV-------EDVNPRW-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ + +++ r++ L+ndlL l+++ea
CP000712_5 243 ----------SRALQQMSQQGSRMQTLLNDLLLLAKLEAT 272

CP000712_3698: domain 1 of 1, from 480 to 545: score 82.9, E = 5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTPL +++g++elL t+l++ q
CP000712_3 480 AKTLFLATMSHEIRTPLYGVLGTLELLGL---------THLDARQ-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ti+r++ l +Li+d+Ld ++ie+g
CP000712_3 516 ----------QGYLHTIQRSSATLFQLISDVLDVTKIESG 545

CP000712_1998: domain 1 of 1, from 267 to 332: score 81.9, E = 9.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL++I+g+aelL+ + l +
CP000712_1 267 AKSRFLATMSHELRTPLNGILGMAELLRG---------GRLEVAD-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e +++++e ll+++n++L ++r+e+g
CP000712_1 303 ----------RQRVEALYKAGEGLLAILNEVLYFARLEEG 332

CP000712_3586: domain 1 of 1, from 710 to 776: score 75.1, E = 8.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a++g++el+ + +++++ +
CP000712_3 710 AKSTFLATISHEIRTPMNAVIGMLELAVK--------RADQGRVD-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le ++++a+ ll Li d+Ld+ rie+g
CP000712_3 747 ----------RSALELAHHSAKDLLGLIGDILDIVRIESG 776

CP000712_2311: domain 1 of 1, from 598 to 664: score 73.9, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHE+RTP++a++g++el+le++ ++ +s+ q+
CP000712_2 598 TKSTFLATMSHEIRTPMNAVIGLLELALEDS------RSGRSDAQT- 637

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t++++a ll+Li d+Ld+srie+g
CP000712_2 638 -------------LQTAHDSAIGLLELIGDILDISRIESG 664

CP000712_1689: domain 1 of 1, from 651 to 719: score 73.6, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLta+rg ++ Ll+ + ++ ++e+r
CP000712_1 651 LRSALLASVSHDLRTPLTAMRGSIDSLLALG-------DAIPAEDR- 689

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le ++eaerl+r i++lLd++r+++g
CP000712_1 690 ----------RELLEGTRNEAERLDRYIQNLLDMTRLGHG 719

CP000712_0147: domain 1 of 1, from 373 to 441: score 71.6, E = 7.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ +sHELRTP+t++ ++ lL+e++ + ++e r
CP000712_0 373 VRSEFVLRASHELRTPVTGMHMAFGLLRERV--------KFPPEARE 411

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++leti +e +rl +LindlL +sr ++g
CP000712_0 412 ----------NDLLETIGEEMQRLTQLINDLLNFSRYQSG 441

CP000712_3532: domain 1 of 1, from 231 to 297: score 70.8, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL+ +++++++ l+ ++s e+
CP000712_3 231 RLSAFSADIAHELRTPLSNLLTHTQVTLT---------RPRSLEE-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l+ l+e++ + ++ind+L l+++++g
CP000712_3 267 ---------YREALHGNLEELQWMAQMINDMLFLAKADHG 297

CP000712_0354: domain 1 of 1, from 255 to 321: score 68.4, E = 6.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg++elL+ ++++++qr
CP000712_0 255 YVERYVHTLTHELKSPLAAIRGASELLQG---------EDMPADQR- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+re+erl+++i++lL l+r e+
CP000712_0 292 ----------ARFAGNIERESERLQQMIERLLNLARVEQM 321

CP000712_4247: domain 1 of 1, from 244 to 309: score 66.5, E = 2.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTPL+a+++ +el l+ + +++
CP000712_4 244 RQAQFIADAAHELRTPLAALKARVELGLR----------SAEPQE-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ le++ + ++rl +L n+lL l+r e+g
CP000712_4 279 ---------WRQTLESAAQGTDRLTHLANQLLSLARVENG 309

CP000712_4865: domain 1 of 1, from 132 to 197: score 65.0, E = 5.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el+ee +
CP000712_4 132 TTKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELPEEGL- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i++ea+rl++L++++L ++ +
CP000712_4 168 ----------RDYTNVIIEEADRLRNLVDRMLGSNKLPSL 197

CP000712_4600: domain 1 of 1, from 418 to 483: score 63.9, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla++ HELRTP+++++g +el+ + ++++e
CP000712_4 418 LKDEFLASVTHELRTPMNGVIGSLELMHT---------LPMGAEM-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +t+ +a+ + ++++ +L+ls ++ag
CP000712_4 454 ----------AQYHHTAVGSAQGMMDMVDAILTLSELQAG 483

CP000712_0018: domain 1 of 1, from 238 to 304: score 63.1, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTP++ +++++e+ l+ +++ +
CP000712_0 238 RLSNFSADIAHELRTPVSNLLTHTEVVLT---------KKRDLDA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l + l++++r++r+i+d+L l+++++g
CP000712_0 274 ---------YEDNLYSNLEDLKRMSRMIDDMLFLAKADNG 304

CP000712_2826: domain 1 of 2, from 180 to 247: score 63.0, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+a +sHELRTPL+ I+g +e+ + +e++ e
CP000712_2 180 AKSDFFAKVSHELRTPLSLILGPLEAVMA---------AEAGRESP- 216

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +e+i+r a ll+++n lLdl++++a
CP000712_2 217 ---------YWKQFEVIQRNAMTLLKQVNTLLDLAKMDAR 247

CP000712_3972: domain 1 of 1, from 796 to 863: score 61.3, E = 6.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ + ++ee
CP000712_3 796 SKTRFLAAVSHDLMQPLNAARLFSAALSQQA-------EGMNEEA-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++++++ ++Li+dlLd+sr+e+g
CP000712_3 834 ----------QQLVQHMDSSLRSAEELISDLLDISRLENG 863

CP000712_1196: domain 1 of 1, from 308 to 373: score 61.3, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ +r+ +e+++ + +e+ r
CP000712_1 308 MQRELVRAVSHELRTPVARLRFGLEMIES----------ATTEQVR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++ +++ l++L++++L+++r+e+g
CP000712_1 344 ----------AKHLAGMDGDIQDLDKLVDEMLTYARLEQG 373

CP000712_4231: domain 1 of 1, from 240 to 306: score 60.8, E = 8.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HELRTPL+ ++g a++ l+ e++
CP000712_4 240 QLSQFSDDLAHELRTPLSNLMGKAQVTLA---------RERDNAN-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le ++e+ rl+r+ind+L l++ ++
CP000712_4 276 ---------YREVLEDSIEELTRLNRIINDMLFLAQVSQP 306

CP000712_2989: domain 2 of 2, from 237 to 302: score 58.6, E = 3.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HE+RTPL+++r++a+ +l+ + ++e
CP000712_2 237 REHRFIADAAHEMRTPLAVLRLHAQNALA---------ASNDAER-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++rl r +n+lL+l+r e
CP000712_2 273 ----------QKALGFLVGGVDRLTRVVNQLLTLARVEPR 302

CP000712_0042: domain 1 of 1, from 241 to 307: score 58.4, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HELR PL+ ++g a+++l+ e+s +
CP000712_0 241 QLSQFSDDLAHELRAPLSNLMGKAQVALT---------RERSLSE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le+ +e++r++r+++d+L l++ ++
CP000712_0 277 ---------YREVLESCTEELDRMSRMVSDMLFLAQVSHP 307

CP000712_0925: domain 1 of 1, from 211 to 277: score 58.0, E = 5.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL ++ + +elL e+ + l++
CP000712_0 211 RERLFTSDVSHELRTPLMVLATSCELLMEN--------PGLDARA-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +e++ r++e +++L+ +L l+r++
CP000712_0 248 ----------RSQVERVARATEEMRELVKTFLMLARAQRD 277

CP000712_1387: domain 1 of 1, from 228 to 292: score 58.0, E = 5.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ + +eqr
CP000712_1 228 SQRQLLRDVSHELRSPLARLRIALALAER-----------AEPEQR- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ re +rl++Li+++L l+r +a+
CP000712_1 263 ----------QALWPRLTRECDRLEDLISEILALARVDAE 292

CP000712_2349: domain 1 of 1, from 201 to 263: score 57.5, E = 7.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +l ++sHELR PLt + +++ l++ ++r
CP000712_2 201 AQQNLLHDISHELRSPLTRMHAAIGLMRQ-------------QPDR- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+++re++r+++Li++lL+l+r+++
CP000712_2 234 ----------PDMLERVERESRRMDDLIEQLLTLARAQSR 263

CP000712_1475: domain 1 of 1, from 184 to 252: score 57.3, E = 8.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a ++ya L + +++ls+++r
CP000712_1 184 SLGRMVASLAHQIRTPLSAAMLYAGHLAD-------NEQALSAQTR- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ t+++ ++ l+++++d+L ++r e +
CP000712_1 223 ----------QRFAATLKERLHELEHQVRDMLVFARGELP 252

CP000712_0283: domain 1 of 1, from 253 to 311: score 53.0, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k fla++sH+LRTPLt +r+ +e L +
CP000712_0 253 DKAYFLAAVSHDLRTPLTRMRLRLERLPD------------------ 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++++ + +++++i ++Ld+ r++++
CP000712_0 282 ----------DEHRQRLRQNITQMDDMIGQVLDYLRAGEQ 311

CP000712_2134: domain 1 of 1, from 280 to 345: score 52.9, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++++Lle ++e+q++
CP000712_2 280 SKTKFLAAVSHDLLQPLNAARLFTSALLE-----------RDEPQNA 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + +++e ++L+ l d+s+++ag
CP000712_2 316 ----------AHLVRNVSNSLEDVENLLGTLVDISKLDAG 345

CP000712_2042: domain 1 of 1, from 361 to 427: score 52.5, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ ++l ee r
CP000712_2 361 AIGQLTGGVAHDFNNLLTIIRSSLHFLQR---------PNLAEERR- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+t+ + ++r +L +lL ++r +a
CP000712_2 398 ----------ERYLKTMSDTVDRGAKLTGQLLAFARRQAL 427

CP000712_3030: domain 1 of 1, from 195 to 260: score 51.8, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++ la++sH+L +PL+a r+++++L+e +l+e +
CP000712_3 195 SKDKYLAAASHDLLQPLNAARLLISTLRE---------RPLPEAE-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+ ++++e ++L+ dlLd+sr+++
CP000712_3 231 ----------HVLVERTHQALEGAEDLLTDLLDISRLDQA 260

CP000712_2826: domain 2 of 2, from 750 to 820: score 51.6, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+a+++HE+++PL+aI+++a + ++l +e+ ++
CP000712_2 750 TMGEFAAYIAHEINQPLSAIMTNANAGTRWL---------GNEPSNI 787

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ +e+l +i+r+++r ++i+ ++ + + ++
CP000712_2 788 PEA-------KEALARIIRDSDRAAEIIRMVRSFLKRQET 820

CP000712_4012: domain 1 of 1, from 233 to 292: score 50.1, E = 9.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++lsHE+RTPL+ +r +++ +
CP000712_4 233 MQQQLLRDLSHEMRTPLSRLRVACDGETD------------------ 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++re++ +++L++d L+l++ +a+
CP000712_4 262 ---------LQRLRDRLIREVDCMQQLVEDTLQLAWQDAE 292

CP000712_1618: domain 1 of 1, from 224 to 288: score 49.6, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++HELR PLtaI+++++++++ + ++
CP000712_1 224 RERRLTDDAAHELRSPLTAIKTHLQVARM----------TDGAVR-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le +++ ++r+ r +++lL l+r e
CP000712_1 259 ----------EQALEHAEQGTDRMHRTLEQLLMLARVEGS 288

CP000712_1968: domain 1 of 1, from 168 to 241: score 48.9, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sHE RTPL+++++ ++l ++ l + + ++ s +++
CP000712_1 168 MRDDFMSIVSHEVRTPLNGLILETQLRKMHLAR--GNLDAFSVDKL- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+ +r++++l rL++d+Ld sri++g
CP000712_1 212 ----------QAMVERDERQINSLIRLVEDMLDVSRIRTG 241

CP000712_0558: domain 1 of 1, from 232 to 291: score 46.7, E = 8.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l++lsHELRTPL+ +r + + +l+++q+
CP000712_0 232 QQRLLLRTLSHELRTPLARLRIAHDS-------------DLPPPQL- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++re+ +++L+++ Ldl++++++
CP000712_0 265 -------------RERLDREVADMQKLLENTLDLAWLDTE 291

CP000712_2303: domain 2 of 2, from 272 to 336: score 44.3, E = 4.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e ++++H LR+PL++Ir ael+++ +e +
CP000712_2 272 ALGEVSSAVAHSLRNPLASIRSSAELAQA-----------FDEGPA- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+++++r+++ i+++L+ r +
CP000712_2 307 ----------QRQVNDIISQVDRMSQWIRQMLQSLRPLND 336

CP000712_3290: domain 1 of 1, from 427 to 495: score 43.6, E = 6.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++H++++ Lt+I++ a+ L+++l ++++ +++
CP000712_3 427 AVGQLTAGVAHDFNNLLTVILTGASFLERDL-------AKADLDKA- 465

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i++++er +L ++lL +sr +
CP000712_3 466 ----------RTRLTHIREAGERGAKLTSQLLAFSRRQRL 495

CP000712_2304: domain 1 of 1, from 272 to 336: score 43.2, E = 8.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ ++++H +R+PL+ Ir ael++e ++++
CP000712_2 272 ALGEMSSAVAHSMRNPLANIRSSAELAQE----------TANPAA-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++++r++r ++dlL r +
CP000712_2 307 ----------QKNITDIISQVDRMSRWVRDLLVSLRPASD 336

CP000712_4503: domain 1 of 1, from 756 to 822: score 42.6, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+e + e + e +
CP000712_4 756 SIGRLAAGVAHEIGNPITGIACLAQNLRE--------EREGDGEII- 793

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + il++++r +r+++ l+ ++ ++
CP000712_4 794 -----------ELSSQILDQTKRVSRIVQSLMSFAHAGGS 822

CP000712_0276: domain 1 of 1, from 370 to 438: score 41.1, E = 3.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a++sHEL++PL+aIr yae ++ ld + ++e+
CP000712_0 370 VLGTMSASISHELNQPLAAIRSYAENAEILLD------HQRTEDA-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + + r+ ++i l+ ++r +
CP000712_0 409 ----------RGNLKLIGELTGRMASIIAHLRAFARRDRH 438

CP000712_2191: domain 1 of 1, from 173 to 241: score 40.9, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+g++el+ +l + + +++
CP000712_2 173 AVGQLTGGIAHDFNNLLASILGALELAGQRL------VQQRLADT-- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le ++ a+r +L+++lL +sr ++
CP000712_2 212 ----------AQLLELSRHNAQRAAALVQRLLAFSRQQTL 241

CP000712_0259: domain 1 of 1, from 221 to 280: score 40.7, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ ++lL +
CP000712_0 221 ERELMLAGVSHDLRTPLTRLRLSLSLLNSD----------------- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + + r++e ++++++++L + r +
CP000712_0 251 ----------NELSDDMVRDIEDMDAILDQFLAFIRDGRD 280

CP000712_2294: domain 1 of 1, from 317 to 385: score 39.1, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++ HE+++ L++I g +elL+++l +e e +
CP000712_2 317 VVGQLAGGMGHEMNNLLSGIGGSLELLQRRL-------QEGRLERV- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++++++++r +L +l +sr +
CP000712_2 356 ----------EAYVDVARDAVQRAMDLTHRLIAFSRHQPL 385

CP000712_2691: domain 1 of 1, from 209 to 274: score 36.9, E = 5.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTPL++ ++ ++ L e++e +
CP000712_2 209 AERSFTANSAHELRTPLASTLAQIQRLHH----------EAPEGPL- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++i+++++ l+rL + l++l+++e g
CP000712_2 245 ----------RLRAQKIEQALRELSRLSEKLMQLAKAEGG 274

CP000712_1901: domain 1 of 1, from 153 to 218: score 36.7, E = 5.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +l+H++++ Lt I+ a l+l+ t ++ +
CP000712_1 153 ALGQLTGGLAHDFNNMLTIIISSARLALA---------TQDPART-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ il++++r +L ++lL ++r +
CP000712_1 189 ----------QRMLQHILDASQRGTELTQQLLSFARRRKF 218

CP000712_2190: domain 1 of 1, from 315 to 383: score 35.5, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++H++++ L +I+g+ el++ +l e+ r
CP000712_2 315 AVGQLSGGIAHDFNNLLGGILGAQELMRQRL-----------EQSRF 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L + +le ++a+r ++L+ +lL +sr ++
CP000712_2 351 DAL-------APLLELSSSAAQRASSLVHRLLAFSRQQTL 383

CP000712_1092: domain 1 of 1, from 408 to 476: score 34.4, E = 2.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+++ ++l + e++
CP000712_1 408 AIGQMSTSIAHELNQPLAALRTLSGNTVRFL-------ERGALETA- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t+ + ++r+ r+ l+ ++r +
CP000712_1 447 ----------STNLRTMNDLIDRMGRITASLRSFARRGDD 476

CP000712_4320: domain 1 of 1, from 412 to 502: score 34.3, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +++ ++++l +d +++ eq+
CP000712_4 412 SVGGLAAGMAHEINNPLGAILHNVQNIRRRL----SSDLPRNQEQAE 454

peLR.l.......edpeyreyletilreaerllrLindlLdlsrieag<-
+ +l + ++ +e+ ++l+ i++++ r +++ +L +sr +
CP000712_4 455 ELGIdLatinrylDSREVPQLLDGIQQAGARAAKIVTHMLSFSRRSNR 502

*

CP000712_4 - -

CP000712_1035: domain 1 of 1, from 282 to 325: score 33.9, E = 3.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s++++++sH+LRTP+t +r+ +elL++ + l ++
CP000712_1 282 ERSQLFSAISHDLRTPITRLRLRVELLED---------ERLQAKF-- 317

peLRledpeyreyletil<-*
+ l+ ++
CP000712_1 318 ----------SQDLDELE 325

CP000712_4267: domain 1 of 1, from 362 to 426: score 33.6, E = 4.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+++PLt+ r+ +e+L+ ld + + +e
CP000712_4 362 ALGQMSAAMAHEINQPLTTQRMQLETLRLLLD------HGRHDEA-- 400

peLRledpeyreyletilreaerllrLindlLdlsr<-*
r++le +++ + r+ +L + l +++r
CP000712_4 401 ----------RQALEPLEQMLTRMAALTSHLKTFAR 426

CP000712_5228: domain 1 of 1, from 221 to 262: score 33.3, E = 5.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++ H+LRTPLt++r+ +e +++ +e +
CP000712_5 221 DRTRMLAAVGHDLRTPLTSLRLRIEFIQD-------------PEVQ- 253

peLRledpeyreyletilr<-*
r++l t+++
CP000712_5 254 ----------RKMLATLDE 262

CP000712_3288: domain 1 of 1, from 525 to 593: score 32.0, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I gy+elL e +++ +e
CP000712_3 525 ELEAFSYSVSHDLRAPLRHIAGYTELLGE-------IEGQGLSERG- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i ++a+ +L+++lL +s+++
CP000712_3 564 ----------KRFLQHIGEAAHFAGSLVDNLLNFSQMGRS 593

CP000712_2295: domain 1 of 1, from 171 to 239: score 31.2, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g el++++l + +se
CP000712_2 171 AIGQLAGGVAHDFNNLLTSISGSFELIQRRL------SKGRSEGL-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++ r rL +lL +s ++
CP000712_2 210 ----------DGVLCMGREAVSRAARLTHRLLAFSSRQSL 239

CP000712_1201: domain 1 of 1, from 238 to 300: score 31.2, E = 2.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l +l+H L+TPL++++g e L+ ++ +e
CP000712_1 238 RYRDSLDDLAHSLKTPLAVLQGVGESLQQRS-------GE------- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +++++++er++++i+ L+ + ++
CP000712_1 271 ----------REQARVLQSQIERMSQQIDYQLQRASLRKS 300

CP000712_2278: domain 1 of 1, from 212 to 276: score 29.5, E = 6.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+l ++sHELRTPLt + + + lL + e ++
CP000712_2 212 QQRELLNAVSHELRTPLTRLDFGLVLLFD----------EVPPAS-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l + ++ l++L+ +lL +sr+ +
CP000712_2 247 ----------RKRLLELVGHVRELDELVLELLSYSRLYNA 276

CP000712_2184: domain 1 of 1, from 241 to 314: score 28.2, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HE+++PL+a+ ya + +++l ++ + + + +r
CP000712_2 241 TLGELASGIAHEINQPLAAVVNYANASQRYL---QGLERDPQARERV 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l++i ++a + + i++l+ + r +
CP000712_2 285 GQG----------LQRISEQATHAAEVIRRLRAFLRKGPR 314

CP000712_0910: domain 1 of 1, from 203 to 268: score 26.9, E = 3.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +a+++HEL TPL++++ ++ ++ + +++ +
CP000712_0 203 AVATQAAGAAHELGTPLATMSVLINEMRQ----------DHTDPML- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++++++++ + + +++l + +
CP000712_0 239 ----------QEDLQILQDQVKLCKETLQQLVRAAEANRR 268


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 1 0|=
-14 17 0|=
-13 42 3|*==
-12 198 120|======*====
-11 431 622|======================== *
-10 803 1154|============================================= *
-9 1006 1192|======================================================== *
-8 965 892|=================================================*====
-7 673 562|===============================*======
-6 455 323|=================*========
-5 264 177|=========*=====
-4 151 95|=====*===
-3 63 50|==*=
-2 47 26|=*=
-1 31 13|*=
0 15 7|*
1 10 3|*
2 6 1|*
3 4 1|*
4 3 0|=
5 1 0|=
> 6 66 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 450.8427
P(chi-square) = 0

Total sequences searched: 5252

Whole sequence top hits:
tophits_s report:
Total hits: 59
Satisfying E cutoff: 59
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 60
Satisfying E cutoff: 60
Total memory: 45K


Acknowledgements:

This research is funded by:

Developed by: