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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Psychrobacter sp. PRwf-1  

Data for CP000713  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000713.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000713_0382 CDS_465660-469133 93.1 2.8e-26 1
CP000713_2072 CDS_2613093-2611426 76.2 1.7e-21 1
CP000713_0197 CDS_234457-236148 68.2 3.1e-19 1
CP000713_0955 CDS_1153144-1151258 60.5 4.8e-17 1
CP000713_1036 CDS_1254156-1252822 55.6 1.2e-15 1
CP000713_0687 CDS_835414-836877 51.0 2.3e-14 1
CP000713_2141 CDS_2697199-2699007 49.7 5.5e-14 1
CP000713_0313 CDS_384067-382403 47.3 2.7e-13 1
CP000713_0198 CDS_237665-236205 45.4 9.2e-13 1
CP000713_0698 CDS_846960-845488 45.2 1.1e-12 1
CP000713_1784 CDS_2237914-2239113 43.9 2.4e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000713_0382 1/1 369 435 .. 1 87 [] 93.1 2.8e-26
CP000713_2072 1/1 299 365 .. 1 87 [] 76.2 1.7e-21
CP000713_0197 1/1 319 384 .. 1 87 [] 68.2 3.1e-19
CP000713_0955 1/1 343 409 .. 1 87 [] 60.5 4.8e-17
CP000713_1036 1/1 230 296 .. 1 87 [] 55.6 1.2e-15
CP000713_0687 1/1 253 325 .. 1 87 [] 51.0 2.3e-14
CP000713_2141 1/1 245 316 .. 1 87 [] 49.7 5.5e-14
CP000713_0313 1/1 268 331 .. 1 87 [] 47.3 2.7e-13
CP000713_0198 1/1 239 297 .. 1 87 [] 45.4 9.2e-13
CP000713_0698 1/1 251 317 .. 1 87 [] 45.2 1.1e-12
CP000713_1784 1/1 146 219 .. 1 79 [. 43.9 2.4e-12

Alignments of top-scoring domains:
CP000713_0382: domain 1 of 1, from 369 to 435: score 93.1, E = 2.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g++ lL + ++l++eq
CP000713_0 369 AKSAFLANISHELRTPLNSIDGFINLLAR--------HGDLTAEQ-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ti++++ +ll+L+nd+Ld+s+ieag
CP000713_0 406 ----------DLYVQTIRKSSAHLLALVNDVLDFSKIEAG 435

CP000713_2072: domain 1 of 1, from 299 to 365: score 76.2, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHELRTPLt+I+gy+e+ + ++ +++
CP000713_2 299 MRKDFVGNVSHELRTPLTVIMGYIETFSD---------QPDLDPK-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ ++ + +++ r++++indlL lsr+e++
CP000713_2 335 ---------WRRGFSLMTQQTVRMNQIINDLLLLSRLENE 365

CP000713_0197: domain 1 of 1, from 319 to 384: score 68.2, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ Ir+++++L + te e
CP000713_0 319 SQRELTRAVSHELRTPVARIRFAVDMLAD---------TEDQESR-- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++e+l+ Li+++L+++++e+g
CP000713_0 355 ----------EMQRDYIDEDIESLNGLIDEILTYAKLEEG 384

CP000713_0955: domain 1 of 1, from 343 to 409: score 60.5, E = 4.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PLtaIr+ elL+e t+l+ e+r
CP000713_0 343 YVTDYVHTLTHELKSPLTAIRASGELLEE---------TDLDGEDR- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +ti +++ l++Li++lL l++ie++
CP000713_0 380 ----------LMLSQTITEQSIKLQSLIDRLLLLAKIEQP 409

CP000713_1036: domain 1 of 1, from 230 to 296: score 55.6, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I+g++e+L++ + + +++
CP000713_1 230 REQLFTGDVSHELRTPLTIIMGASEVLQA---------QLSDHPKA- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i a+ +++i+ lL lsr+ +
CP000713_1 267 ----------LEFTQRINTTAKETSEIISALLLLSRAPEK 296

CP000713_0687: domain 1 of 1, from 253 to 325: score 51.0, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ ++f+a++sHELR PL+a+++ a+lL+ + l+ ++ ++ q+
CP000713_0 253 REQRFTADASHELRSPLAALKLQADLLQQ----QiLQLSGVEDDNQL 295

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i + +er +L+++lL l++ie +
CP000713_0 296 -----------FYHAQNISNGIERATHLVDQLLILAKIEPQ 325

CP000713_2141: domain 1 of 1, from 245 to 316: score 49.7, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +la++sHELRTP+t Ir+ +e++++ + e+se +++
CP000713_2 245 ANNLLLAHASHELRTPITRIRLQIEMMEMLS-------NEMSEGTKA 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + + r++ l++L++ +L sr++ag
CP000713_2 285 KF--------HKRAQAVNRDLTGLNDLVESILLVSRLDAG 316

CP000713_0313: domain 1 of 1, from 268 to 331: score 47.3, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++l+++sHELR PL+ + ++el ++++ +e
CP000713_0 268 ARKQMLSDISHELRSPLARLEVATELTRDFA-----------PEA-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i++e+ r+++Li+ + + ++
CP000713_0 302 ----------SHYLDRIEKESARMNELIEHIIRIQSLQMR 331

CP000713_0198: domain 1 of 1, from 239 to 297: score 45.4, E = 9.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r++ae+L +
CP000713_0 239 ERTIMLAGISHDLRTPLTRMRLTAEMLPD------------------ 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e ++ ++e ++++++++ + + ++
CP000713_0 268 ----------EFFREGLIYDIEDMDAILEQFISFMKDGSD 297

CP000713_0698: domain 1 of 1, from 251 to 317: score 45.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f n++HELRTP++++++ ++++l+ ++ +++
CP000713_0 251 SLSRFSDNIAHELRTPIATLSTQTQVMLT---------KPRESDE-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l+ ++ +++l+++ind+L l++ + +
CP000713_0 287 ---------YIEQLHHQHDTLKQLSAMINDMLLLAKTQKE 317

CP000713_1784: domain 1 of 1, from 146 to 219: score 43.9, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+e+l++++HE ++PL++Irg+a+lL ++ +++++ + +e++
CP000713_1 146 VSREMLRSVAHEVKNPLAGIRGAAQLLIKQTQHtkLpSDQLGEMTQV 192

qrlpeLRledpeyreyletilreaerllrLindlL<-*
++ + y +++++e++rl +Li++lL
CP000713_1 193 DAKKL--------TTYANIVISETDRLTQLIEQLL 219


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 30 1|*===
-12 88 54|======*====
-11 210 280|=========================== *
-10 414 521|==================================================== *
-9 448 538|======================================================== *
-8 436 402|==================================================*====
-7 280 253|===============================*===
-6 180 146|==================*====
-5 109 80|=========*====
-4 70 42|=====*===
-3 40 22|==*==
-2 18 11|=*=
-1 20 6|*==
0 6 3|*
1 4 1|*
2 0 0|
> 3 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 163.8687
P(chi-square) = 2.149e-29

Total sequences searched: 2370

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: