Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Psychrobacter sp. PRwf-1  

Data for CP000713  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000713.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000713_0659 CDS_805514-803592 54.4 5.7e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000713_0659 1/1 432 505 .. 1 70 [] 54.4 5.7e-16

Alignments of top-scoring domains:
CP000713_0659: domain 1 of 1, from 432 to 505: score 54.4, E = 5.7e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpe..earea
ERa IARELHDs++QsLs +k+q+ ++++l++++ + p+ + +
CP000713_0 432 ERATIARELHDSLAQSLSYLKIQTTILEKRLQHthCDSPDlaLVSDS 478

ldeirelarealaevRrllgdLRpaal<-*
+ +++ + a++ +R+ll ++R +
CP000713_0 479 IGKLKDGLTSAYQHLRDLLVTFRLSLN 505


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 6 0|=
-13 43 0|=====
-12 76 26|==*======
-11 164 217|=================== *
-10 466 504|==================================================== *
-9 503 572|======================================================== *
-8 350 441|======================================= *
-7 284 277|==============================*=
-6 173 156|=================*==
-5 143 84|=========*======
-4 60 43|====*==
-3 40 22|==*==
-2 30 11|=*==
-1 8 5|*
0 7 2|*
1 5 1|*
2 3 0|=
3 5 0|=
4 2 0|=
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 228.1737
P(chi-square) = 1.931e-312

Total sequences searched: 2370

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: