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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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11 projects found  

1 accessions found for Thermosipho melanesiensis BI429  

Data for CP000716  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000716.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000716_1792 CDS_1823011-1824282 100.3 2.1e-28 1
CP000716_1459 CDS_1482455-1483852 95.0 6.4e-27 1
CP000716_0275 CDS_294179-291576 56.7 4.5e-16 1
CP000716_0293 CDS_308922-310091 54.4 2.1e-15 1
CP000716_1776 CDS_1809404-1808445 42.3 5.5e-12 1
CP000716_0483 CDS_526323-525124 30.4 1.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000716_1792 1/1 189 256 .. 1 87 [] 100.3 2.1e-28
CP000716_1459 1/1 239 305 .. 1 87 [] 95.0 6.4e-27
CP000716_0275 1/1 649 715 .. 1 87 [] 56.7 4.5e-16
CP000716_0293 1/1 192 255 .. 1 83 [. 54.4 2.1e-15
CP000716_1776 1/1 107 172 .. 1 87 [] 42.3 5.5e-12
CP000716_0483 1/1 181 236 .. 1 78 [. 30.4 1.3e-08

Alignments of top-scoring domains:
CP000716_1792: domain 1 of 1, from 189 to 256: score 100.3, E = 2.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ef++n+sHELRTPLt+I gyae+Lle ++l+++++
CP000716_1 189 ARKEFISNVSHELRTPLTSIHGYAEALLE---------DNLDDKEL- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l +i++ea r+ rLindlLdl+++e+g
CP000716_1 226 ---------IRRFLTIIESEAARMTRLINDLLDLEKLESG 256

CP000716_1459: domain 1 of 1, from 239 to 305: score 95.0, E = 6.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+an+sHELRTPL+a+++y+e+Ll+ e ++e +
CP000716_1 239 IKTEFVANISHELRTPLSAVKAYTETLLN---------MEIDPESQ- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++i++++erl++L+ndlLd++ i++g
CP000716_1 276 ----------KEFLSIIYEQSERLESLLNDLLDFTLIDSG 305

CP000716_0275: domain 1 of 1, from 649 to 715: score 56.7, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a + HELR+P++++ g+++ L++ + + +++
CP000716_0 649 ALGEMAARVVHELRNPISVLGGFVKRLEK--------YIDDDSKR-- 685

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i +e+ rl+ +++++L++sr
CP000716_0 686 ----------RKYIKIISDEIVRLEGIVSEILEFSRDKKV 715

CP000716_0293: domain 1 of 1, from 192 to 255: score 54.4, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++n+sHEL+TP++ ++gy+++L++ ++ ++ e +
CP000716_0 192 LQEEFVSNVSHELKTPIANLIGYSKMLQR--------WGMKDKEIL- 229

peLRledpeyreyletilreaerllrLindlLdlsr<-*
+e +e i + a + +L++++ +s+
CP000716_0 230 ----------KESVENIFNTALNMKELVENMIIISK 255

CP000716_1776: domain 1 of 1, from 107 to 172: score 42.3, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f+ ++sHEL TPL+a++g++ L+e + s++ +
CP000716_1 107 AKVNFTTSISHELFTPLSALKGNLYFLRE----------NISDKFT- 142

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ ++++++r++r+i++l +s +e g
CP000716_1 143 ----------LEVLNQMEKSVRRMERIIRQLKIISMLELG 172

CP000716_0483: domain 1 of 1, from 181 to 236: score 30.4, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H+++TP+ I ++a L++ +l+++
CP000716_0 181 AIGKLMVSIAHDMNTPIGIIYTAATELEN----------KLDDDN-- 215

peLRledpeyreyletilreaerllrLindl<-*
+e++++i++ a+ +++Li l
CP000716_0 216 ----------KELVNIIIKNAQKISQLIKSL 236


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 11 0|==
-13 23 1|*===
-12 103 42|======*===========
-11 240 222|====================================*===
-10 353 413|==========================================================*
-9 349 426|==========================================================*
-8 296 319|================================================== *
-7 194 201|=================================*
-6 124 115|===================*=
-5 68 63|==========*=
-4 52 34|=====*===
-3 28 17|==*==
-2 16 9|=*=
-1 7 4|*=
0 3 2|*
1 4 1|*
2 1 0|=
> 3 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 130.8034
P(chi-square) = 3.203e-23

Total sequences searched: 1879

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: