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Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Coxiella burnetii Dugway 5J108-111  

Data for CP000733  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000733.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000733_1112 CDS_1160137-1158128 93.3 2.2e-26 1
CP000733_1611 CDS_1712753-1713511 86.4 1.9e-24 1
CP000733_0612 CDS_630104-631996 76.4 1.3e-21 1
CP000733_0229 CDS_228154-230127 55.9 8.3e-16 1
CP000733_1227 CDS_1308462-1309898 55.2 1.4e-15 1
CP000733_1972 CDS_2072647-2071370 46.5 3.9e-13 1
CP000733_0782 CDS_817605-820031 44.8 1.2e-12 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000733_1112 1/1 291 356 .. 1 87 [] 93.3 2.2e-26
CP000733_1611 1/1 27 94 .. 1 87 [] 86.4 1.9e-24
CP000733_0612 1/1 257 322 .. 1 87 [] 76.4 1.3e-21
CP000733_0229 1/1 140 205 .. 1 87 [] 55.9 8.3e-16
CP000733_1227 1/1 253 318 .. 1 87 [] 55.2 1.4e-15
CP000733_1972 1/1 217 275 .. 1 87 [] 46.5 3.9e-13
CP000733_0782 1/2 269 293 .. 1 25 [. 35.6 4.8e-10

Alignments of top-scoring domains:
CP000733_1112: domain 1 of 1, from 291 to 356: score 93.3, E = 2.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHELRTPL+aI+g++++L++ ++ls+eq
CP000733_1 291 TKSDFLAMMSHELRTPLNAILGMSQILKT---------HNLSDEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i + ++ ll+L+ndlLd++++eag
CP000733_1 327 ----------QGQIDVISQTGQNLLALLNDLLDFAKLEAG 356

CP000733_1611: domain 1 of 1, from 27 to 94: score 86.4, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+an+sHELRTPLt+Irgy+e+Ll+ + ++++
CP000733_1 27 IRSDFVANVSHELRTPLTVIRGYLETLLK--------KEVRDSKS-- 63

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++++ +++ + r++ +i+dlL lsr+e+
CP000733_1 64 ---------YQKIFQQMYQHSARMETIIDDLLLLSRLESD 94

CP000733_0612: domain 1 of 1, from 257 to 322: score 76.4, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+an+sH+LRTP+++I+g a++ + +e + +q
CP000733_0 257 AKSEFIANISHDLRTPINGILGIAQIFNM---------HEHTKKQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + +a+ ll L++d+Ld++r+e g
CP000733_0 293 ----------EPLINDLSASANLLLGLVEDILDFARLEVG 322

CP000733_0229: domain 1 of 1, from 140 to 205: score 55.9, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+ H+LRTPLt+I++ ae L + +++ee+
CP000733_0 140 VKSEFLANMGHDLRTPLTGIILIAEYLWK----------KQTEEKD- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++ ++++ll+ in++L+++ eag
CP000733_0 176 ----------KQLSKDLILAGKQLLHFINEVLEITNVEAG 205

CP000733_1227: domain 1 of 1, from 253 to 318: score 55.2, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+ ++++++l+ ++++e+r
CP000733_1 253 REKRFTADAAHELRTPLAALNTHTQVALR----------AKTPEER- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++l ++r + +++lL+l r+ +
CP000733_1 289 ----------KEALLKVLAGVNRGTHVVQQLLTLNRMVPE 318

CP000733_1972: domain 1 of 1, from 217 to 275: score 46.5, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +++ a+ L +
CP000733_1 217 NRTQMLAAISHDLRTPITRMKLRAQFLDD------------------ 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ ++ +in+ L ++r +
CP000733_1 246 ----------STTRNALVKDLNEMEVMINETLSFARDDFA 275

CP000733_0782: domain 1 of 2, from 269 to 293: score 35.6, E = 4.8e-10
*->akseflanlsHELRTPLtaIrgyae<-*
aksef+an+sH++RTP+++++g+++
CP000733_0 269 AKSEFIANMSHDIRTPIAGMLGMLQ 293


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 5 0|=
-14 23 0|====
-13 78 1|*===========
-12 139 47|======*=============
-11 222 243|================================ *
-10 346 452|================================================== *
-9 375 467|====================================================== *
-8 313 349|============================================= *
-7 224 220|===============================*
-6 131 126|=================*=
-5 75 69|=========*=
-4 60 37|=====*===
-3 23 19|==*=
-2 15 10|=*=
-1 7 5|*
0 6 2|*
1 2 1|*
2 4 0|=
3 2 0|=
> 4 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 246.6500
P(chi-square) = 0

Total sequences searched: 2058

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: