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Classification of phyla is from NCBI page
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4 accessions found for Sinorhizobium medicae WSM419  

Data for CP000739  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000739.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000739_0188 CDS_210721-207968 93.7 1.1e-26 1
CP000739_0596 CDS_660992-657612 78.5 2.3e-22 1
CP000739_0373 CDS_403202-400959 53.5 2.9e-15 1
CP000739_0676 CDS_747784-749178 45.0 7.1e-13 1
CP000739_0186 CDS_207569-206007 44.4 1.1e-12 2
CP000739_0593 CDS_655044-653182 44.2 1.2e-12 1
CP000739_1098 CDS_1209312-1207492 34.2 8.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000739_0188 1/1 420 488 .. 1 87 [] 93.7 1.1e-26
CP000739_0596 1/1 676 742 .. 1 87 [] 78.5 2.3e-22
CP000739_0373 1/1 384 449 .. 1 87 [] 53.5 2.9e-15
CP000739_0676 1/1 244 309 .. 1 87 [] 45.0 7.1e-13
CP000739_0593 1/1 404 472 .. 1 87 [] 44.2 1.2e-12
CP000739_0186 2/2 87 146 .. 10 87 .] 38.0 6.9e-11
CP000739_1098 1/1 379 447 .. 1 87 [] 34.2 8.7e-10

Alignments of top-scoring domains:
CP000739_0188: domain 1 of 1, from 420 to 488: score 93.7, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+gy+e+L ee+ + ee++
CP000739_0 420 AKSQFLASMSHELRTPLNAIIGYSEMLIEEA-------RDHKEEEL- 458

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i +++++ll Lind+Ldls+iea+
CP000739_0 459 ----------VPDLDKIASAGRHLLTLINDILDLSKIEAN 488

CP000739_0596: domain 1 of 1, from 676 to 742: score 78.5, E = 2.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + +lsHELRTPL+a++gya++L++ d++ ++
CP000739_0 676 AKSRYVVGLSHELRTPLNAVLGYAQILER--------DETIPPSR-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i+r+a++l+ Li+ lLd+s+ieag
CP000739_0 713 ----------QNAIKAIRRSADHLSGLIDGLLDISKIEAG 742

CP000739_0373: domain 1 of 1, from 384 to 449: score 53.5, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P++a ++y+++L + +
CP000739_0 384 SKTRFLAAASHDLLQPINAAKLYLSMLTD---------RMGQPGV-- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++r+ ++++L++ lLd+sr+++
CP000739_0 420 ----------EEVVSRLKRSFTSIESLLQALLDISRLDSS 449

CP000739_0676: domain 1 of 1, from 244 to 309: score 45.0, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ Ir+ + l+++ + + e++
CP000739_0 244 ALRHFTGNASHQLRTPLAIIRTQLALAQR----------ATTIEET- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++++ +r++ +lL +++i+a
CP000739_0 280 ----------RAAAMRADEAVADAERILAQLLLMAKIDAA 309

CP000739_0593: domain 1 of 1, from 404 to 472: score 44.2, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ ++++l+ +s+
CP000739_0 404 ILGQVAAGVAHEINQPVATIRAYADNARTFLE------RGQSATA-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e e+i + +er ++ ++l+ ++r ++
CP000739_0 443 ----------AENMESIAELTERVGAITDELRRFARKGHF 472

CP000739_0186: domain 2 of 2, from 87 to 146: score 38.0, E = 6.9e-11
*->sHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpe
+H+LRTPL+aI+gy+e++le ++++++q+ +L
CP000739_0 87 RHDLRTPLNAIIGYSEMILE---------EARDSQQH--AL------ 116

yreyletilreaerllrLindlLdlsrieag<-*
e l++il++a ll++++ + lsr e
CP000739_0 117 -TEDLQVILSAAAELLKQVDAIASLSRGEVA 146

CP000739_1098: domain 1 of 1, from 379 to 447: score 34.2, E = 8.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+lsHE+++PL+a ++ya+ + +++ +++e
CP000739_1 379 GLGQMSAALSHEFNQPLAAAKTYADSAAL------LIERGRTAEA-- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++r+ ++ + l+ ++r ++
CP000739_1 418 ----------SDNVRRISGLIDRMASISRHLRNFARKPNE 447


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 4 0|=
-13 13 1|*==
-12 44 32|======*==
-11 136 170|============================ *
-10 205 316|========================================= *
-9 292 327|==========================================================*
-8 260 245|================================================*===
-7 203 154|==============================*==========
-6 125 88|=================*=======
-5 66 48|=========*====
-4 42 26|=====*===
-3 19 13|==*=
-2 9 7|=*
-1 7 3|*=
0 4 1|*
1 1 1|*
2 1 0|=
3 0 0|
> 4 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 103.2378
P(chi-square) = 1.223e-17

Total sequences searched: 1441

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: