Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Sinorhizobium medicae WSM419  

Data for CP000739  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000739.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000739_0478 CDS_524017-522359 58.1 2.7e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000739_0478 1/1 357 421 .. 1 70 [] 58.1 2.7e-17

Alignments of top-scoring domains:
CP000739_0478: domain 1 of 1, from 357 to 421: score 58.1, E = 2.7e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R R+AR+LHDsv Q+L+a++l+l l+ ++ p+ ar+ l e+
CP000739_0 357 GRMRLARDLHDSVLQNLTAARLKLKLIG-----EAFPDGARQKLMEV 398

relarealaevRrllgdLRpaal<-*
l+ e ++ vR + + Rp+++
CP000739_0 399 GSLILEQQQCVRKFVDENRPGEE 421


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 3 0|=
-13 13 0|===
-12 25 16|===*=
-11 48 132|========== *
-10 196 306|======================================== *
-9 253 347|=================================================== *
-8 226 268|============================================== *
-7 192 168|=================================*=====
-6 147 95|==================*===========
-5 143 51|==========*==================
-4 86 26|=====*============
-3 45 13|==*======
-2 28 7|=*====
-1 20 3|*===
0 8 1|*=
1 3 0|=
2 1 0|=
3 0 0|
4 0 0|
5 1 0|=
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 591.9792
P(chi-square) = 0

Total sequences searched: 1441

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: