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1 accessions found for Methanococcus vannielii SB  

Data for CP000742  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000742.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000742_0138 CDS_162987-161722 84.7 4.8e-24 1
CP000742_0436 CDS_495445-497286 83.8 8.4e-24 1
CP000742_0604 CDS_670496-668571 82.4 2.2e-23 1
CP000742_0136 CDS_159614-157752 78.0 3.8e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000742_0138 1/1 197 265 .. 1 87 [] 84.7 4.8e-24
CP000742_0436 1/1 388 456 .. 1 87 [] 83.8 8.4e-24
CP000742_0604 1/1 409 477 .. 1 87 [] 82.4 2.2e-23
CP000742_0136 1/1 393 461 .. 1 87 [] 78.0 3.8e-22

Alignments of top-scoring domains:
CP000742_0138: domain 1 of 1, from 197 to 265: score 84.7, E = 4.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+a +sHE+RTP+t+I+gy+elL +e+ ++l+ q
CP000742_0 197 LKSEFTAIISHEIRTPITSIKGYTELLNDESM------GKLNNNQ-- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+til+ + rl rL++d+Ld+srie +
CP000742_0 236 ----------KMCLNTILENVIRLGRLVSDVLDISRIERN 265

CP000742_0436: domain 1 of 1, from 388 to 456: score 83.8, E = 8.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+l+++sHELRTPLt+I+gy+elL+e++ ++l+e q
CP000742_0 388 LKTELLSAVSHELRTPLTSIKGYLELLREGAA------GKLTETQ-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e++++ ++rl+r ++++ dl + ++
CP000742_0 427 ----------KEFIEVVYENVNRLRRHVENIKDLVKVDSL 456

CP000742_0604: domain 1 of 1, from 409 to 477: score 82.4, E = 2.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+++a +sHELRTPLt+I+gy+el l++ ++ +e q
CP000742_0 409 LKSDLIAIVSHELRTPLTSIKGYVELVLDGTM------GTINESQ-- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+++++ + rl+rLi+ +Ldls+ie g
CP000742_0 448 ----------RKCLQVADDNIIRLRRLIESMLDLSKIERG 477

CP000742_0136: domain 1 of 1, from 393 to 461: score 78.0, E = 3.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+++a +sHE+RTPLt+I+gy+el l+e+ ++ + q
CP000742_0 393 LKSDLIAIVSHEIRTPLTSIKGYVELVLDEA------VGKINNSQ-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l t+++ + rl+rLi+ +Ldls++ g
CP000742_0 432 ----------RKCLTTARENVVRLNRLISSMLDLSKLAKG 461


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 8 0|==
-13 42 1|*======
-12 101 38|======*==========
-11 227 198|================================*=====
-10 335 369|======================================================== *
-9 322 381|====================================================== *
-8 248 285|========================================== *
-7 165 179|============================ *
-6 113 103|=================*=
-5 49 56|=========*
-4 20 30|====*
-3 21 16|==*=
-2 14 8|=*=
-1 5 4|*
> 0 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 135.4035
P(chi-square) = 3.679e-24

Total sequences searched: 1678

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: