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1 accessions found for Methanococcus aeolicus Nankai-3  

Data for CP000743  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000743.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000743_1420 CDS_1492291-1494213 84.0 6.6e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000743_1420 1/1 416 484 .. 1 87 [] 84.0 6.6e-24

Alignments of top-scoring domains:
CP000743_1420: domain 1 of 1, from 416 to 484: score 84.0, E = 6.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse ++ +sHELRTPLt+I+gy+el l++ ++ +e q
CP000743_1 416 FKSEIISIVSHELRTPLTSIKGYVELVLDGTM------GTINESQ-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le++ + ++rl rLi+++Ldls+ie g
CP000743_1 455 ----------KRCLEIANENIDRLKRLIDNMLDLSKIERG 484


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 14 0|===
-13 34 1|*=====
-12 109 34|=====*=============
-11 199 176|=============================*====
-10 325 327|======================================================*
-9 278 338|=============================================== *
-8 194 253|================================= *
-7 159 159|==========================*
-6 80 91|============== *
-5 49 50|========*
-4 14 26|=== *
-3 13 14|==*
-2 13 7|=*=
-1 3 3|*
0 2 2|*
1 0 1|*
2 2 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 204.4656
P(chi-square) = 1.889e-38

Total sequences searched: 1490

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: