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1 accessions found for Methanococcus maripaludis C7  

Data for CP000745  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000745.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000745_0543 CDS_559108-557189 82.1 2.8e-23 1
CP000745_0368 CDS_382304-384148 78.0 4e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000745_0543 1/1 412 480 .. 1 87 [] 82.1 2.8e-23
CP000745_0368 1/1 390 458 .. 1 87 [] 78.0 4e-22

Alignments of top-scoring domains:
CP000745_0543: domain 1 of 1, from 412 to 480: score 82.1, E = 2.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse++a +sHELRTPLt+I+gy+el l++ ++ ++ q
CP000745_0 412 LKSELIAIVSHELRTPLTSIKGYVELVLDGTM------GAINDSQ-- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++++ + rl+rLi+ +Ldls+ie g
CP000745_0 451 ----------KKCLQVADDNIVRLRRLIESMLDLSKIERG 480

CP000745_0368: domain 1 of 1, from 390 to 458: score 78.0, E = 4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse+++ +sHELRTPLt+I+gy++lL++e ++l+e+q
CP000745_0 390 LKSELISIVSHELRTPLTSILGYIQLLKDETA------GKLNEKQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i + +erl r+ +++ dl +
CP000745_0 429 ----------KEFVSVISENSERLKRITDNMSDLVSVDDD 458


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 12 0|==
-13 39 1|*=====
-12 113 40|=====*===========
-11 223 211|==============================*=
-10 379 393|======================================================= *
-9 335 406|================================================ *
-8 269 304|======================================= *
-7 166 191|======================== *
-6 108 110|===============*
-5 69 60|========*=
-4 30 32|====*
-3 16 17|==*
-2 17 8|=*=
-1 4 4|*
0 5 2|*
1 0 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 156.9695
P(chi-square) = 1.367e-28

Total sequences searched: 1788

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: