Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Actinobacillus succinogenes 130Z  

Data for CP000746  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000746.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000746_0160 CDS_192874-191189 65.7 2.3e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000746_0160 1/1 363 435 .. 1 70 [] 65.7 2.3e-19

Alignments of top-scoring domains:
CP000746_0160: domain 1 of 1, from 363 to 435: score 65.7, E = 2.3e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER IARELHDs++Q L+ + +ql l++++l kd ++ +++ +
CP000746_0 363 ERSIIARELHDSLAQVLAYLQIQLTLLKHHL--NKDEPnaknKSLAI 407

ldeirelarealaevRrllgdLR.paal<-*
++ ++++ +++++R+ll ++R + ++
CP000746_0 408 IRDFEQALTGGYTQLRELLATFRlTVQE 435


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 6 0|=
-13 49 0|=======
-12 68 23|==*======
-11 132 190|================= *
-10 388 442|================================================= *
-9 444 502|======================================================== *
-8 316 386|======================================== *
-7 245 243|==============================*
-6 159 137|=================*==
-5 126 73|=========*======
-4 67 38|====*====
-3 35 19|==*==
-2 19 10|=*=
-1 8 5|*
0 8 2|*
1 2 1|*
2 3 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 212.7836
P(chi-square) = 3.109e-309

Total sequences searched: 2079

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: