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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Phenylobacterium zucineum HLK1  

Data for CP000748  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000748.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000748_0281 CDS_331253-329334 51.5 2.4e-15 1
CP000748_0105 CDS_113555-115612 39.3 6.8e-12 2
CP000748_0187 CDS_223459-224802 36.4 4.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000748_0281 1/1 275 341 .. 1 87 [] 51.5 2.4e-15
CP000748_0105 2/2 314 379 .. 1 87 [] 38.7 9.9e-12
CP000748_0187 1/1 217 288 .. 1 87 [] 36.4 4.6e-11

Alignments of top-scoring domains:
CP000748_0281: domain 1 of 1, from 275 to 341: score 51.5, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L I+g +++L++ ++ ls+ +
CP000748_0 275 AMGQLTGGVAHDFNNLLMPILGGLDILQR--------SSRLSPRE-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ ++++aer +L+++lL ++r +
CP000748_0 312 ----------RKLLDGAIQSAERAKALVQRLLAFARRQPL 341

CP000748_0105: domain 2 of 2, from 314 to 379: score 38.7, E = 9.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++H++++ L +I g + +L++ + ++
CP000748_0 314 AVGQLTAGIAHDFNNLLQVIVGGLTMLER---------GGDPARA-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++aer L +lL +sr +
CP000748_0 350 ----------QARIQMMRQAAERGATLTKQLLAFSRRQKL 379

CP000748_0187: domain 1 of 1, from 217 to 288: score 36.4, E = 4.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ ++l+HEL++PL+aI y+ +++ +la+ +++++++
CP000748_0 217 ALGEMSSALAHELNQPLSAIANYLTGAQR----LLARQKDATSQKV- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++ +a r ++i++l+++ ++
CP000748_0 259 ----------NGALDKAVAQALRSGDIIRRLREFVARGET 288


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 1 0|=
-12 7 7|===*
-11 36 38|==================*
-10 50 71|========================= *
-9 65 73|================================= *
-8 66 55|===========================*=====
-7 40 34|================*===
-6 19 20|=========*
-5 14 10|====*==
-4 10 5|==*==
-3 2 3|=*
-2 3 1|*=
-1 3 0|==
0 3 0|==
1 0 0|
2 0 0|
> 3 6 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 14.3026
P(chi-square) = 0.07421

Total sequences searched: 325

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: