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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000749  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000749.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000749_0665 CDS_729209-730552 57.2 1.5e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000749_0665 1/1 250 319 .. 1 70 [] 57.2 1.5e-16

Alignments of top-scoring domains:
CP000749_0665: domain 1 of 1, from 250 to 319: score 57.2, E = 1.5e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER+ +RELHD++ Q L + k +ela+ l ++ e++ + ++l+
CP000749_0 250 ERRGFSRELHDGINQLLVSCKFRIELAENKL--KRGHEkeVIHQELA 294

eirelarealaevRrllgdLRpaal<-*
+ +l++++++evR++ ++LRp+ l
CP000749_0 295 KAGDLINQTISEVRQISHNLRPTLL 319


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 14 0|=
-13 80 0|=====
-12 164 49|==*=======
-11 300 406|================== *
-10 820 944|================================================= *
-9 958 1071|========================================================= *
-8 694 826|========================================= *
-7 501 519|==============================*
-6 340 293|=================*==
-5 263 157|=========*======
-4 122 82|====*===
-3 86 42|==*===
-2 36 21|=*=
-1 28 11|*=
0 15 5|*
1 8 2|*
2 6 1|*
3 1 0|=
> 4 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 535.5838
P(chi-square) = 0

Total sequences searched: 4439

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: