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Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Kineococcus radiotolerans SRS30216  

Data for CP000750  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000750.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000750_1664 CDS_1784713-1786920 82.1 7.1e-23 1
CP000750_0332 CDS_340790-339312 81.8 8.7e-23 1
CP000750_3592 CDS_3772167-3773753 75.1 6.6e-21 1
CP000750_1225 CDS_1305793-1304603 74.6 9.1e-21 1
CP000750_3009 CDS_3116963-3118492 72.2 4.3e-20 1
CP000750_3785 CDS_3986369-3984750 69.8 2.2e-19 1
CP000750_0891 CDS_922757-924064 68.9 3.8e-19 1
CP000750_3137 CDS_3256589-3255420 65.9 2.7e-18 1
CP000750_1015 CDS_1065565-1068141 65.9 2.8e-18 1
CP000750_2102 CDS_2210022-2211554 64.1 8.6e-18 1
CP000750_1801 CDS_1893949-1892477 54.7 4e-15 2
CP000750_2779 CDS_2881523-2883028 54.2 5.5e-15 1
CP000750_1665 CDS_1786917-1788779 37.6 2.8e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000750_1664 1/1 493 561 .. 1 87 [] 82.1 7.1e-23
CP000750_0332 1/1 257 325 .. 1 87 [] 81.8 8.7e-23
CP000750_3592 1/1 267 334 .. 1 87 [] 75.1 6.6e-21
CP000750_1225 1/1 157 221 .. 1 87 [] 74.6 9.1e-21
CP000750_3009 1/1 285 356 .. 1 87 [] 72.2 4.3e-20
CP000750_3785 1/1 280 347 .. 1 87 [] 69.8 2.2e-19
CP000750_0891 1/1 147 213 .. 1 87 [] 68.9 3.8e-19
CP000750_3137 1/1 156 224 .. 1 87 [] 65.9 2.7e-18
CP000750_1015 1/1 625 693 .. 1 87 [] 65.9 2.8e-18
CP000750_2102 1/1 260 327 .. 1 87 [] 64.1 8.6e-18
CP000750_2779 1/1 265 329 .. 1 87 [] 54.2 5.5e-15
CP000750_1801 2/2 254 316 .. 1 87 [] 53.3 9.8e-15
CP000750_1665 1/1 361 429 .. 1 87 [] 37.6 2.8e-10

Alignments of top-scoring domains:
CP000750_1664: domain 1 of 1, from 493 to 561: score 82.1, E = 7.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks++la++sHELRTPLt+I gy+elL++ + +e +e+
CP000750_1 493 VKSDLLATVSHELRTPLTSIAGYLELLRD------GALGEVPEDV-- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +++r ++rl++Li+dlL lsr e
CP000750_1 532 ----------AAVLGIVERNTDRLRSLIEDLLLLSRVEPL 561

CP000750_0332: domain 1 of 1, from 257 to 325: score 81.8, E = 8.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a +sHELRTPLtaI++ + l ++ ++l+ee
CP000750_0 257 LKRQFTAVVSHELRTPLTAIKASLRLVTSGV------LGPLPEEP-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++++ a+rl +L+nd+Ld +r++ag
CP000750_0 296 ----------ARLLRIADENADRLAALVNDILDVERLDAG 325

CP000750_3592: domain 1 of 1, from 267 to 334: score 75.1, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+aIrg+ael + ++ + ++++
CP000750_3 267 QMRRFVADASHELRTPLAAIRGFAELYRQGA--------VREPDDV- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+ e+ rl rL++dlL l+r+++
CP000750_3 305 ----------AHVMGRIEGESTRLGRLVEDLLALARLDEA 334

CP000750_1225: domain 1 of 1, from 157 to 221: score 74.6, E = 9.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sHELRTP++a+ + e L + se++
CP000750_1 157 ERRELVANVSHELRTPVSALHAVMENLVD----------GVSEPD-- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l t+l ++erl rL+++lLdlsr++ag
CP000750_1 192 ----------HETLATALAQTERLGRLVEQLLDLSRLDAG 221

CP000750_3009: domain 1 of 1, from 285 to 356: score 72.2, E = 4.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+aIrgy+el ++ + + + q++
CP000750_3 285 RVRQFVADASHELRTPLAAIRGYSELTRR--------SRDVTGGQVP 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ea r+ L++dlL l+r+++g
CP000750_3 324 ADV-------LHAMGRVESEALRMTGLVEDLLLLARLDSG 356

CP000750_3785: domain 1 of 1, from 280 to 347: score 69.8, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ e+L + ++ ++
CP000750_3 280 VQRRFVSDVSHELRTPLTTIRMAGEVLHD-------ARGGFDPAV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +l ++er ++L++dlL++sr +ag
CP000750_3 318 ----------ARSAELMLTQLERFDSLLSDLLEISRFDAG 347

CP000750_0891: domain 1 of 1, from 147 to 213: score 68.9, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+++++e+ +e ++ ++e +
CP000750_0 147 VRRDFVANVSHELKTPVGALSLLSEAVEE---------AADDPEAV- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++rea rl +L++++ dlsr++a
CP000750_0 184 ----------RHFSRRMRREAVRLTALVQEIIDLSRLQAA 213

CP000750_3137: domain 1 of 1, from 156 to 224: score 65.9, E = 2.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+++HELR PLt+++ ++ Ll+ +++ s+eq+
CP000750_3 156 DTTSLIATVAHELRSPLTSVKQFTASLLR-------RWDRFSDEQK- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+t++ +aer +rL+ dlLd +r +ag
CP000750_3 195 ----------RLMLSTVQADAERVSRLVGDLLDVARVDAG 224

CP000750_1015: domain 1 of 1, from 625 to 693: score 65.9, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LRTPL+++++ ++ L++ +d +l+ee r
CP000750_1 625 VRGALLTAVSHDLRTPLATLKASLDSLRA-------KDIDLPEEIR- 663

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l + ++a+rl+ Li+dlLdl+r ++g
CP000750_1 664 ----------DELLAEVGNSADRLQGLIDDLLDLTRVRSG 693

CP000750_2102: domain 1 of 1, from 260 to 327: score 64.1, E = 8.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f a++sHELR PLt++ + + lL++ +++els+
CP000750_2 260 REARFSADVSHELRSPLTTLTTSVALLQK-------RRAELSPRS-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ ++ e++r r ++dlL+lsr+e+g
CP000750_2 298 ----------RQVLDLVDAELRRFARTLDDLLELSRLESG 327

CP000750_2779: domain 1 of 1, from 265 to 329: score 54.2, E = 5.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++ HELRTPLt ++g++elL ++ ++
CP000750_2 265 TQRQFLDDAGHELRTPLTIVQGHLELLDV-----------DDPRDV- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l+e+ r+ rL++dl l++++ +
CP000750_2 300 ----------TDTRDLVLDELSRMTRLVDDLTLLAKARRP 329

CP000750_1801: domain 2 of 2, from 254 to 316: score 53.3, E = 9.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELR P++++r++ae+ + +
CP000750_1 254 GQRRFVADASHELRSPVATLRAAAEVWAG---------AGVP----- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ e+ rl++L++dlL l+r+++g
CP000750_1 287 ----------APFTALVQAESARLEALVSDLLALARADEG 316

CP000750_1665: domain 1 of 1, from 361 to 429: score 37.6, E = 2.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a +sH+L PLta++gy+el l+ + ++l+ +
CP000750_1 361 ELVHLAAVASHDLASPLTAVLGYLELVLD------VHGEALGGQG-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re t+ r+a r++ Li+ +Ld +r+++
CP000750_1 400 ----------REWMATAVRAALRMQGLIEAVLDHARAGST 429


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 46 3|*==
-12 177 102|======*=====
-11 393 531|========================= *
-10 703 985|============================================ *
-9 907 1017|========================================================= *
-8 822 761|===============================================*====
-7 574 480|=============================*======
-6 366 276|=================*=====
-5 190 151|=========*==
-4 129 81|=====*===
-3 64 42|==*=
-2 34 22|=*=
-1 15 11|*
0 18 6|*=
1 4 3|*
2 7 1|*
3 1 0|=
4 1 0|=
5 3 0|=
> 6 16 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 313.6264
P(chi-square) = 0

Total sequences searched: 4480

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: