Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Kineococcus radiotolerans SRS30216  

Data for CP000750  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000750.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000750_3767 CDS_3954416-3952914 106.6 4.2e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000750_3767 1/1 295 360 .. 1 72 [. 106.6 4.2e-30

Alignments of top-scoring domains:
CP000750_3767: domain 1 of 1, from 295 to 360: score 106.6, E = 4.2e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++++LLrLQar++ +ee + aL+E+ +RV +
CP000750_3 295 EVHHRVKNNLQTVAALLRLQARRIVSEEG-----RSALQEAMRRVST 336

mAliHEeLYksedldtvdfseYlek<-*
+A++HE L+++ d ++vdf+++l++
CP000750_3 337 IATVHETLSQGID-ENVDFDQVLDR 360


Histogram of all scores:
score obs exp (one = represents 24 sequences)
----- --- ---
-15 4 0|=
-14 18 0|=
-13 93 28|=*==
-12 320 294|============*=
-11 1363 819|==================================*======================
-10 1031 1060|=========================================== *
-9 574 895|======================== *
-8 549 600|======================= *
-7 221 356|========== *
-6 150 198|======= *
-5 67 107|=== *
-4 34 56|==*
-3 27 29|=*
-2 8 15|*
-1 10 8|*
0 5 4|*
1 3 2|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 726.1556
P(chi-square) = 0

Total sequences searched: 4480

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: