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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Kineococcus radiotolerans SRS30216  

Data for CP000751  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000751.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000751_0018 CDS_15496-13946 38.7 1.9e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000751_0018 1/1 261 347 .. 1 70 [] 38.7 1.9e-12

Alignments of top-scoring domains:
CP000751_0018: domain 1 of 1, from 261 to 347: score 38.7, E = 1.9e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.........
ER+RIA LHD+v Q L a + + +a+++++ ++ ++++++++++
CP000751_0 261 ERQRIAATLHDGVVQELVATSYVVAAAAQRAQ-RAQSAqhggstgsd 306

.........earealdeirelarealaevRrllgdLRpaal<-*
++ ++++++ ++l+e+++++r ++a +R ll d+ p+ l
CP000751_0 307 etagtsepnGTSAQLQEAAGAVRSSIAGLRSLLLDIYPPSL 347


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 7 2|=*=====
-11 9 16|========= *
-10 18 39|================== *
-9 36 44|==================================== *
-8 37 34|=================================*===
-7 17 21|================= *
-6 14 12|===========*==
-5 19 6|=====*=============
-4 11 3|==*========
-3 3 1|*==
-2 6 0|======
-1 2 0|==
0 2 0|==
1 1 0|=
2 0 0|
> 3 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 41.8953
P(chi-square) = 1.928e-07

Total sequences searched: 184

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: