Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Shewanella baltica OS185  

Data for CP000753  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000753.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000753_0816 CDS_988128-993476 105.0 2.1e-29 1
CP000753_3739 CDS_4505431-4501715 97.9 2.2e-27 1
CP000753_3104 CDS_3754731-3757532 91.6 1.4e-25 1
CP000753_4148 CDS_5015566-5010689 85.1 9.5e-24 1
CP000753_1342 CDS_1641998-1643296 78.4 7.6e-22 1
CP000753_3170 CDS_3839294-3836202 77.2 1.6e-21 1
CP000753_0052 CDS_63769-62723 65.0 4.7e-18 1
CP000753_0257 CDS_299157-298111 59.3 1.9e-16 1
CP000753_2900 CDS_3523744-3522662 53.8 7.2e-15 1
CP000753_0251 CDS_293637-292261 52.1 2.2e-14 1
CP000753_1891 CDS_2288131-2289528 51.2 3.8e-14 1
CP000753_0593 CDS_722989-724425 51.1 4e-14 1
CP000753_1049 CDS_1270187-1268919 50.2 7.6e-14 1
CP000753_1796 CDS_2191987-2189819 49.9 9.1e-14 1
CP000753_0301 CDS_345005-346048 49.2 1.4e-13 1
CP000753_4150 CDS_5016693-5018009 48.5 2.2e-13 1
CP000753_3521 CDS_4243682-4242384 46.7 7.4e-13 1
CP000753_1719 CDS_2104748-2108188 46.6 7.6e-13 1
CP000753_4256 CDS_5149886-5147733 46.6 7.9e-13 1
CP000753_3773 CDS_4541113-4538960 45.6 1.5e-12 1
CP000753_2196 CDS_2657100-2655181 45.0 2.2e-12 1
CP000753_2788 CDS_3389280-3391076 39.2 9.9e-11 1
CP000753_3684 CDS_4435935-4433998 31.7 1.3e-08 1
CP000753_0285 CDS_326354-327610 29.7 4.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000753_0816 1/1 1042 1107 .. 1 87 [] 105.0 2.1e-29
CP000753_3739 1/1 721 786 .. 1 87 [] 97.9 2.2e-27
CP000753_3104 1/1 298 363 .. 1 87 [] 91.6 1.4e-25
CP000753_4148 1/1 899 964 .. 1 87 [] 85.1 9.5e-24
CP000753_1342 1/1 205 271 .. 1 87 [] 78.4 7.6e-22
CP000753_3170 1/1 509 574 .. 1 87 [] 77.2 1.6e-21
CP000753_0052 1/1 127 195 .. 1 87 [] 65.0 4.7e-18
CP000753_0257 1/1 126 191 .. 1 87 [] 59.3 1.9e-16
CP000753_2900 1/1 136 202 .. 1 87 [] 53.8 7.2e-15
CP000753_0251 1/1 244 306 .. 1 87 [] 52.1 2.2e-14
CP000753_1891 1/1 250 316 .. 1 87 [] 51.2 3.8e-14
CP000753_0593 1/1 260 323 .. 1 87 [] 51.1 4e-14
CP000753_1049 1/1 200 269 .. 1 87 [] 50.2 7.6e-14
CP000753_1796 1/1 498 563 .. 1 87 [] 49.9 9.1e-14
CP000753_0301 1/1 128 193 .. 1 87 [] 49.2 1.4e-13
CP000753_4150 1/1 233 293 .. 1 87 [] 48.5 2.2e-13
CP000753_3521 1/1 214 279 .. 1 87 [] 46.7 7.4e-13
CP000753_1719 1/1 786 852 .. 1 87 [] 46.6 7.6e-13
CP000753_4256 1/1 472 539 .. 1 87 [] 46.6 7.9e-13
CP000753_3773 1/1 494 562 .. 1 87 [] 45.6 1.5e-12
CP000753_2196 1/1 269 335 .. 1 87 [] 45.0 2.2e-12
CP000753_2788 1/1 376 444 .. 1 87 [] 39.2 9.9e-11
CP000753_3684 1/1 405 474 .. 1 87 [] 31.7 1.3e-08
CP000753_0285 1/1 208 272 .. 1 87 [] 29.7 4.7e-08

Alignments of top-scoring domains:
CP000753_0816: domain 1 of 1, from 1042 to 1107: score 105.0, E = 2.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000753_0 1042 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1077

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000753_0 1078 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1107

CP000753_3739: domain 1 of 1, from 721 to 786: score 97.9, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000753_3 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000753_3 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000753_3104: domain 1 of 1, from 298 to 363: score 91.6, E = 1.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000753_3 298 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll +ind+Ld+s++eag
CP000753_3 334 ----------VDYIKTIERSATNLLGIINDILDFSKLEAG 363

CP000753_4148: domain 1 of 1, from 899 to 964: score 85.1, E = 9.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g+++l++ t+ls +q
CP000753_4 899 AKSAFLANMSHEIRTPMNAVLGMLQLIQH---------TALSVQQ-- 934

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++ + +a++ll L+nd+Ld+s+i+ag
CP000753_4 935 ----------QDYVNKTQIAAKSLLGLLNDILDFSKIDAG 964

CP000753_1342: domain 1 of 1, from 205 to 271: score 78.4, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000753_1 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP000753_1 242 ----------VKPLALMQQQTRRMQSMVEQLLMLSRIEDA 271

CP000753_3170: domain 1 of 1, from 509 to 574: score 77.2, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL +el++ q
CP000753_3 509 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SELPPAQ-- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000753_3 545 ----------QQMLALSQYSGTLLQTVLNDILDFSRLEQG 574

CP000753_0052: domain 1 of 1, from 127 to 195: score 65.0, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP000753_0 127 LRNSILLSVSHDLRTPLSTIIGTLTTLKEYM-------PKLSASQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP000753_0 166 ----------TELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000753_0257: domain 1 of 1, from 126 to 191: score 59.3, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000753_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP000753_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000753_2900: domain 1 of 1, from 136 to 202: score 53.8, E = 7.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000753_2 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDAAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l+r++nd+L +++ ++
CP000753_2 173 ----------AKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000753_0251: domain 1 of 1, from 244 to 306: score 52.1, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + +++e+
CP000753_0 244 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTAET-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i eae+l++Li++lL+lsr
CP000753_0 281 --------------DRIGYEAEQLEKLISELLELSRVKLS 306

CP000753_1891: domain 1 of 1, from 250 to 316: score 51.2, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP000753_1 250 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIDDDPQQ- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ + ++++ +++lL l+r ++
CP000753_1 287 ----------KFHLAAIDAGVVHMSHTVEQLLVLARVDSI 316

CP000753_0593: domain 1 of 1, from 260 to 323: score 51.1, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+f+a+++HEL+TPLt++rg +e + +e ++
CP000753_0 260 QVSRFTADAAHELKTPLTVLRGKLEQAVL---------SENPS---- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ il+e+ +l+++ + lL ls++++g
CP000753_0 294 ----------QLDLNAILDEVGHLSAMTRKLLLLSQADSG 323

CP000753_1049: domain 1 of 1, from 200 to 269: score 50.2, E = 7.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000753_1 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL ++ +e++
CP000753_1 240 ----------QDFLDEMQLDIKEMEDLLQELLNYASLESQ 269

CP000753_1796: domain 1 of 1, from 498 to 563: score 49.9, E = 9.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000753_1 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDIDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000753_1 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000753_0301: domain 1 of 1, from 128 to 193: score 49.2, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ ++sHELRTP++ I +++e+L++ +++ q
CP000753_0 128 SHKNLVNAVSHELRTPIARIEFNIEMLRN---------NTQDNNQ-- 163

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ +++ l++L++++L+ +r +++
CP000753_0 164 ----------LTQLDRIEFSLNELNSLVSEMLEHARFDSE 193

CP000753_4150: domain 1 of 1, from 233 to 293: score 48.5, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000753_4 233 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000753_4 264 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 293

CP000753_3521: domain 1 of 1, from 214 to 279: score 46.7, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e ++se+ r
CP000753_3 214 DNKLLSRAVSHDLKTPIARLRFGIEALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP000753_3 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP000753_1719: domain 1 of 1, from 786 to 852: score 46.6, E = 7.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000753_1 786 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 822

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000753_1 823 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 852

CP000753_4256: domain 1 of 1, from 472 to 539: score 46.6, E = 7.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++ e
CP000753_4 472 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDNAEVV-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000753_4 510 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 539

CP000753_3773: domain 1 of 1, from 494 to 562: score 45.6, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l ++ + e +
CP000753_3 494 ELDRFAYIASHDLKSPLRGIEQLTSWLAEDL-------SDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000753_3 533 ----------QKYLGLIQSRIHRMVLLLDGLLMFSRIGRV 562

CP000753_2196: domain 1 of 1, from 269 to 335: score 45.0, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak l+++ HE+RTP++aI+gy+ +L++ +ls +q
CP000753_2 269 AKLAVLSSINHEIRTPINAILGYSRMLKK----------ALSQPQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ +a+ l + ++ L +s++eag
CP000753_2 304 --------ELDKIVDKMAWSANLLYSVAENTLNYSKAEAG 335

CP000753_2788: domain 1 of 1, from 376 to 444: score 39.2, E = 9.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP000753_2 376 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMQDKA-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++ ++rl +++ ++ ++r +g
CP000753_2 415 ----------LDNIKIIIELTDRLADIVGQFKSFTRKSQG 444

CP000753_3684: domain 1 of 1, from 405 to 474: score 31.7, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000753_3 405 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 444

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000753_3 445 ----------QSVLTLIQQEVTRADSIISRLRNLLKKRPV 474

CP000753_0285: domain 1 of 1, from 208 to 272: score 29.7, E = 4.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L ++e se
CP000753_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELAS------KPSDEISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000753_0 247 --------------AILTEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 53 3|*===
-12 183 98|======*=======
-11 428 512|=============================== *
-10 712 950|=================================================== *
-9 826 981|==========================================================*
-8 726 735|====================================================*
-7 545 463|=================================*=====
-6 336 266|==================*=====
-5 196 146|==========*===
-4 122 78|=====*===
-3 66 41|==*==
-2 33 21|=*=
-1 30 11|*==
0 17 5|*=
1 6 3|*
2 2 1|*
3 1 0|=
4 2 0|=
> 5 34 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 316.3601
P(chi-square) = 0

Total sequences searched: 4323

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: