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Classification of phyla is from NCBI page
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6 accessions found for Ochrobactrum anthropi ATCC 49188  

Data for CP000758  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000758.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000758_2643 CDS_2794325-2796679 90.3 2e-25 1
CP000758_0380 CDS_403205-404497 85.6 4.4e-24 1
CP000758_0817 CDS_862748-860931 72.3 2.6e-20 1
CP000758_2663 CDS_2820085-2818241 68.3 3.4e-19 1
CP000758_0811 CDS_856690-854114 66.4 1.2e-18 1
CP000758_2645 CDS_2801152-2799749 55.2 1.8e-15 1
CP000758_2055 CDS_2165488-2166612 54.9 2.2e-15 1
CP000758_0469 CDS_505896-504535 46.4 5.6e-13 1
CP000758_0408 CDS_437794-434279 45.0 1.4e-12 1
CP000758_2195 CDS_2329434-2327119 42.4 7.4e-12 1
CP000758_0147 CDS_165913-167205 40.3 2.9e-11 1
CP000758_2108 CDS_2225670-2228243 39.5 5.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000758_2643 1/1 544 613 .. 1 87 [] 90.3 2e-25
CP000758_0380 1/1 200 267 .. 1 87 [] 85.6 4.4e-24
CP000758_0817 1/1 368 433 .. 1 87 [] 72.3 2.6e-20
CP000758_2663 1/1 328 397 .. 1 87 [] 68.3 3.4e-19
CP000758_0811 1/1 626 694 .. 1 87 [] 66.4 1.2e-18
CP000758_2645 1/1 240 306 .. 1 87 [] 55.2 1.8e-15
CP000758_2055 1/1 135 199 .. 1 87 [] 54.9 2.2e-15
CP000758_0469 1/1 232 297 .. 1 87 [] 46.4 5.6e-13
CP000758_0408 1/1 798 863 .. 1 87 [] 45.0 1.4e-12
CP000758_2195 1/1 508 579 .. 1 87 [] 42.4 7.4e-12
CP000758_0147 1/1 209 275 .. 1 87 [] 40.3 2.9e-11
CP000758_2108 1/1 479 545 .. 1 87 [] 39.5 5.1e-11

Alignments of top-scoring domains:
CP000758_2643: domain 1 of 1, from 544 to 613: score 90.3, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+++++ + ++l+++
CP000758_2 544 AKSEFLANMSHELRTPLNAIIGFSEMIQAGTF------GPLGSDR-- 582

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i+ +++ ll+ ind+Ld+s+ieag
CP000758_2 583 ---------YEEYINDIHTSGNFLLNVINDILDMSKIEAG 613

CP000758_0380: domain 1 of 1, from 200 to 267: score 85.6, E = 4.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+L+ +++++ ++
CP000758_0 200 MRSDFIANASHELRTPLASLRGFIETLQG---------PARNDAAAR 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++++aer++rLi+dlL lsr+e
CP000758_0 238 ----------DRFLDIMQKQAERMSRLIDDLLSLSRLEMR 267

CP000758_0817: domain 1 of 1, from 368 to 433: score 72.3, E = 2.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L +++ee r
CP000758_0 368 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTEESR- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi d+ d sr++a+
CP000758_0 404 ----------KRLLDIIQHDVRRLDRLITDISDASRLDAE 433

CP000758_2663: domain 1 of 1, from 328 to 397: score 68.3, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+++la++sHELRTPL++I+g++++L e+ ++l e++
CP000758_2 328 GKGRLLAAVSHELRTPLNSIIGFSDMLSHEMG------GKLANEKQ- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey i++++++ll+L+n +Ld sr+e+g
CP000758_2 368 ----------REYAGLIHQSGHYLLELVNAVLDNSRLETG 397

CP000758_0811: domain 1 of 1, from 626 to 694: score 66.4, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g++elL++ + + l+e q+
CP000758_0 626 IKNDFVQHVSYELRSPLTNIIGFTELLQT------PAFGSLNERQI- 665

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i ++ ll ++nd+Ldl+ +ag
CP000758_0 666 -----------EYLDHISTSSSVLLTIVNDILDLATVDAG 694

CP000758_2645: domain 1 of 1, from 240 to 306: score 55.2, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae +l +++ ++
CP000758_2 240 GLKQVSDNIAHDLKTPLTRLRNRAEEALS---------GKKAGPE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+le i+ e+++l r n +L +sr+eag
CP000758_2 276 ---------YREALEDIIGESDQLIRTFNAILMISRLEAG 306

CP000758_2055: domain 1 of 1, from 135 to 199: score 54.9, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ s+e+
CP000758_2 135 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ----------VVSDED-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i +e++r+ +L++++ +s +
CP000758_2 170 ----------RALARLITDETDRIVSLVDRMEVFSDERPI 199

CP000758_0469: domain 1 of 1, from 232 to 297: score 46.4, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++HEL+TPL+++++ a++++ +++e+ r
CP000758_0 232 RERNFAIFAAHELKTPLAGLKTQAQIAEG----------AKDEKMR- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i ++r +rL n+lLdl+ +e+
CP000758_0 268 ----------ANAVRQIAAGVDRTSRLTNQLLDLAALETS 297

CP000758_0408: domain 1 of 1, from 798 to 863: score 45.0, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++ H++ +PL+a r+y+ +L e +l+ ++
CP000758_0 798 GKTRFLAAAGHDILQPLNAARLYSTALAE----------KLGRSET- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + i++++e ++++ +Ld+sr+++g
CP000758_0 834 ----------SEFARNIDSSLEAVEAILGMVLDISRLDTG 863

CP000758_2195: domain 1 of 1, from 508 to 579: score 42.4, E = 7.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ ++ + + e
CP000758_2 508 AWADVARRIAHEIKNPLTPIQLSAERIRRRY----GKVITEDREV-- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
CP000758_2 549 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 579

CP000758_0147: domain 1 of 1, from 209 to 275: score 40.3, E = 2.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I + ++ +++ + +++ +
CP000758_0 209 ALDGLAAAAAHELGTPLATIALVVKEMQR---------ARTTDPGL- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++r+++++++l ls +++
CP000758_0 246 ----------AEDIALLHSQTQRCREILQRLTSLSSEGEE 275

CP000758_2108: domain 1 of 1, from 479 to 545: score 39.5, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl++ + +s++
CP000758_2 479 AVGQLAGGIAHDFNNVLTAIIMSSDLLLTN--------HRASDPS-- 515

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
CP000758_2 516 ----------FPDIMNIKQNANRAASLVRQLLAFSRRQTL 545


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 7 0|=
-13 27 2|*==
-12 139 62|======*=========
-11 264 323|============================== *
-10 470 600|===================================================== *
-9 528 620|==========================================================*
-8 470 464|===================================================*=
-7 331 292|================================*====
-6 194 168|==================*===
-5 125 92|==========*===
-4 71 49|=====*==
-3 42 26|==*==
-2 22 13|=*=
-1 9 7|*
0 8 3|*
1 6 1|*
2 1 1|*
3 1 0|=
> 4 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 192.1204
P(chi-square) = 3.197e-35

Total sequences searched: 2731

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: