Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Ochrobactrum anthropi ATCC 49188  

Data for CP000760  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000760.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000760_0002 CDS_3481-947 113.1 9.1e-40 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000760_0002 1/1 522 602 .. 1 85 [] 113.1 9.1e-40

Alignments of top-scoring domains:
CP000760_0002: domain 1 of 1, from 522 to 602: score 113.1, E = 9.1e-40
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRVKN+L++V Sia QT na+ +++++++++gRL+AL++aHdL
CP000760_0 522 ELNHRVKNILSLVKSIALQTGANATNVADYAQTLEGRLRALASAHDL 568

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
+ + g++L++Ll e+ yg++ ++Ritl+GP+
CP000760_0 569 ---SLDGKNGGSLADLLKTEVNLYGDA-PGRITLEGPP 602


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 14 0|==============
-11 19 1|*==================
-10 24 16|===============*========
-9 30 41|============================== *
-8 23 42|======================= *
-7 17 28|================= *
-6 10 15|========== *
-5 7 7|======*
-4 6 3|==*===
-3 2 1|*=
-2 3 0|===
-1 1 0|=
0 0 0|
> 1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 22.3705
P(chi-square) = 0.0004451

Total sequences searched: 161

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: