Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

6 accessions found for Ochrobactrum anthropi ATCC 49188  

Data for CP000761  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000761.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000761_0055 CDS_58363-54938 80.9 3.1e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000761_0055 1/1 474 542 .. 1 87 [] 80.9 3.1e-24

Alignments of top-scoring domains:
CP000761_0055: domain 1 of 1, from 474 to 542: score 80.9, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++ + +a+lL + ++l++eq
CP000761_0 474 YKSDFLANMSHELRTPLNSSLILAKLLAD------NPHENLTDEQ-- 512

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +ti+++++ ll+Lind+Ldls+ieag
CP000761_0 513 ----------VKYARTIQSSGNDLLNLINDILDLSKIEAG 542


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 1 2|=*
-11 7 10|======= *
-10 13 20|============= *
-9 22 20|===================*==
-8 14 15|==============*
-7 8 9|========*
-6 12 5|====*=======
-5 3 3|==*
-4 6 1|*=====
-3 0 0|
-2 0 0|
-1 2 0|==
> 0 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 11.6001
P(chi-square) = 0.0407

Total sequences searched: 91

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: