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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rickettsia rickettsii str. Iowa  

Data for CP000766  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000766.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000766_0340 CDS_318150-319643 84.4 4.9e-24 1
CP000766_0797 CDS_731893-731495 75.3 1.8e-21 1
CP000766_0632 CDS_584596-583340 62.3 8.9e-18 1
CP000766_0978 CDS_891872-890073 50.7 1.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000766_0340 1/1 268 333 .. 1 87 [] 84.4 4.9e-24
CP000766_0797 1/1 1 69 [. 1 87 [] 75.3 1.8e-21
CP000766_0632 1/1 211 269 .. 1 87 [] 62.3 8.9e-18
CP000766_0978 1/1 371 441 .. 1 87 [] 50.7 1.7e-14

Alignments of top-scoring domains:
CP000766_0340: domain 1 of 1, from 268 to 333: score 84.4, E = 4.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L e++ee+
CP000766_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS----------ERDEEKS- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
CP000766_0 304 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 333

CP000766_0797: domain 1 of 1, from 1 to 69: score 75.3, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efl+n+ HE++TPLt+I+ + e+L +++ ++ +e+qr
CP000766_0 1 MKHEFLRNINHEINTPLTGIISLGETLWANY-------DKFNEDQR- 39

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ l++Lin++Ld+s++ +
CP000766_0 40 ----------RNAVEVIAKSSIKLNSLINNILDFSKLSSL 69

CP000766_0632: domain 1 of 1, from 211 to 269: score 62.3, E = 8.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ +la++sH+LRTPLt +++ +el++e +e+
CP000766_0 211 KKTTMLAMISHDLRTPLTRMKLQLELMEE-------------SEE-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ ++++in Ld+++ e+
CP000766_0 243 -------------IEGLKQDILTMQQMINSYLDFAKGEST 269

CP000766_0978: domain 1 of 1, from 371 to 441: score 50.7, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
CP000766_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
CP000766_0 407 -----ERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 441


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 4 0|=
-14 41 0|===========
-13 76 1|*==================
-12 155 31|=======*===============================
-11 203 164|========================================*==========
-10 220 304|======================================================= *
-9 234 314|==========================================================*
-8 153 235|======================================= *
-7 112 148|============================ *
-6 83 85|=====================*
-5 43 46|===========*
-4 19 25|===== *
-3 16 13|===*
-2 12 6|=*=
-1 5 3|*=
0 1 1|*
1 0 0|
2 0 0|
3 2 0|=
4 0 0|
> 5 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 578.0537
P(chi-square) = 0

Total sequences searched: 1384

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: