Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Campylobacter curvus 525.92  

Data for CP000767  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000767.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000767_0567 CDS_598657-597659 44.5 1.4e-12 1
CP000767_0740 CDS_767167-766040 32.4 3.6e-09 1
CP000767_0303 CDS_320840-322618 29.9 1.9e-08 1
CP000767_1549 CDS_1599960-1601168 27.6 8.2e-08 1
CP000767_0848 CDS_874446-873280 27.2 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000767_0567 1/1 120 184 .. 1 87 [] 44.5 1.4e-12
CP000767_0740 1/1 170 229 .. 1 87 [] 32.4 3.6e-09
CP000767_0303 1/1 360 430 .. 1 87 [] 29.9 1.9e-08
CP000767_1549 1/1 183 249 .. 1 87 [] 27.6 8.2e-08
CP000767_0848 1/1 179 244 .. 1 87 [] 27.2 1.1e-07

Alignments of top-scoring domains:
CP000767_0567: domain 1 of 1, from 120 to 184: score 44.5, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+l+HE+R+P+ +++++a++Ll+ +++++
CP000767_0 120 SMGQVAAHLAHEIRNPIGSVSLLASTLLK----------RADAKT-- 154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+ ++ r +r+i L +++ +
CP000767_0 155 ----------QPIASEIQGAIWRVERIIKATLLFTKGVHI 184

CP000767_0740: domain 1 of 1, from 170 to 229: score 32.4, E = 3.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+++ HE++TPL++I++ +el + ++
CP000767_0 170 FLDGFIRDTTHEINTPLSVILMSIELFKS---------DP------- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i+ +a + +L +d L r+ +g
CP000767_0 201 ----------AKYLSNIKTAATTIANLYED-LVALRLKNG 229

CP000767_0303: domain 1 of 1, from 360 to 430: score 29.9, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ n++H+ R+PLt +++ ++ L++ + + ++s+e
CP000767_0 360 ELGELIGNIAHQWRQPLTRLSLILQNLRA-----FKRKNKMSDES-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++e lr++e + + +++++ + + +
CP000767_0 400 ---------FYEAVENSLRQIEFMTSTVENFRNFYKKDDA 430

CP000767_1549: domain 1 of 1, from 183 to 249: score 27.6, E = 8.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL+++++ e+ l ++ +++
CP000767_1 183 YQKELFVGVAHELKTPLAVMKTKNEVTLI---------KTRESDK-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+l++ ++++ ++++i+ +L++ r e
CP000767_1 219 ---------YIEALRSNNEAINNMNSMISSVLEIGRQEGA 249

CP000767_0848: domain 1 of 1, from 179 to 244: score 27.2, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HE++TPL+ I++ +e++ + + l++
CP000767_0 179 TLNRFIKDSTHEINTPLSIIMMSIETADK---------SSLNPRN-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i+ +a++l+++ +dl l+
CP000767_0 215 ----------LKRMNNIELAAKSLSNIYDDLVHLTFSSDK 244


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 15 0|===
-13 53 1|*========
-12 108 44|=======*==========
-11 203 228|================================== *
-10 334 424|======================================================== *
-9 339 438|========================================================= *
-8 307 328|==================================================== *
-7 225 206|==================================*===
-6 147 119|===================*=====
-5 84 65|==========*===
-4 48 34|=====*==
-3 24 18|==*=
-2 14 9|=*=
-1 6 5|*
0 3 2|*
1 2 1|*
2 4 0|=
> 3 13 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 160.7460
P(chi-square) = 9.403e-29

Total sequences searched: 1931

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: