Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Campylobacter jejuni subsp. doylei 269.97  

Data for CP000768  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000768.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000768_0765 CDS_820998-822287 46.3 3.8e-13 1
CP000768_1012 CDS_1069605-1068586 38.6 5.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000768_0765 1/1 224 291 .. 1 87 [] 46.3 3.8e-13
CP000768_1012 1/1 131 195 .. 1 87 [] 38.6 5.6e-11

Alignments of top-scoring domains:
CP000768_0765: domain 1 of 1, from 224 to 291: score 46.3, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++sHEL++PL++I + +e+L++ +el ++++
CP000768_0 224 QLASVISAISHELKNPLSVINLSLEMLKD---------EELEDKKLK 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i r++ l++L l + ++
CP000768_0 262 ----------KELLGKISRQSIKLNALTHKLNFVFNLNSE 291

CP000768_1012: domain 1 of 1, from 131 to 195: score 38.6, E = 5.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+l+HE+R+P+ +I+++a++L + +se ++
CP000768_1 131 SMGSVAAHLAHEIRNPIGSISLLASTLFA-----------RSELKN- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +r++n L +++ +
CP000768_1 166 ----------KHIVLEIQKAIARVERIVNSTLLFTKGVHI 195


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 4 0|=
-14 7 0|==
-13 37 1|*======
-12 93 39|======*=========
-11 193 205|================================= *
-10 298 380|================================================== *
-9 352 393|==========================================================*
-8 266 294|============================================= *
-7 188 185|==============================*=
-6 113 106|=================*=
-5 92 58|=========*======
-4 35 31|=====*
-3 24 16|==*=
-2 9 8|=*
-1 3 4|*
0 4 2|*
1 4 1|*
2 2 0|=
> 3 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 121.1518
P(chi-square) = 2.954e-21

Total sequences searched: 1731

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: