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Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Fervidobacterium nodosum Rt17-B1  

Data for CP000771  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000771.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000771_1251 CDS_1377640-1380549 104.6 1.1e-29 1
CP000771_1459 CDS_1618311-1617043 100.3 1.9e-28 1
CP000771_0396 CDS_440616-439216 84.6 5.5e-24 1
CP000771_0858 CDS_951988-954699 70.1 6.7e-20 1
CP000771_0764 CDS_863217-861991 67.9 2.9e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000771_1251 1/1 462 527 .. 1 87 [] 104.6 1.1e-29
CP000771_1459 1/1 186 253 .. 1 87 [] 100.3 1.9e-28
CP000771_0396 1/1 242 308 .. 1 87 [] 84.6 5.5e-24
CP000771_0858 1/1 683 749 .. 1 87 [] 70.1 6.7e-20
CP000771_0764 1/1 205 272 .. 1 87 [] 67.9 2.9e-19

Alignments of top-scoring domains:
CP000771_1251: domain 1 of 1, from 462 to 527: score 104.6, E = 1.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++ lL+e t+l+e+q
CP000771_1 462 AKSIFLANMSHEIRTPLNGIIGFTNLLKE---------TKLDEKQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++il+++e ll++ind+Ldl++ie+g
CP000771_1 498 ----------EKYVSIILKSSELLLEIINDILDLAKIESG 527

CP000771_1459: domain 1 of 1, from 186 to 253: score 100.3, E = 1.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef++n+sHELRTPLt+I gyae+Ll+ ++ls +++
CP000771_1 186 LRREFISNVSHELRTPLTSIHGYAEALLD---------DDLSNKEL- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l +i++e+ r+ rLindlLdl+++e+g
CP000771_1 223 ---------VRKFLGVIESESARMTRLINDLLDLEKLESG 253

CP000771_0396: domain 1 of 1, from 242 to 308: score 84.6, E = 5.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+an+sHELRTPL+aI++y+e++l+ ++s e++
CP000771_0 242 IKTNFIANISHELRTPLAAIKAYVETMLN---------MPMSQEEI- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++++ rl++L++dlLd+s++e+
CP000771_0 279 ----------HEFLDVVYSQSIRLEELLSDLLDFSQLESH 308

CP000771_0858: domain 1 of 1, from 683 to 749: score 70.1, E = 6.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a ++HELR+P++++ g+++ L++ ++e
CP000771_0 683 ALGEMAARVAHELRNPISVLGGFIKRLEK---------NIDNPESG- 719

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i++e+ rl++++n++Ld+sr
CP000771_0 720 ----------KKYVNIIKEEILRLEQIVNEILDFSREPRA 749

CP000771_0764: domain 1 of 1, from 205 to 272: score 67.9, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f++++sHELRTP++ ++gy+++L++ +++ + e +
CP000771_0 205 AQETFVSAVSHELRTPVANLLGYVSMLKR--------WGTDDKEIL- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++++ + ++i+++L l++ +
CP000771_0 243 ----------EEAIGAIEESSKEIKEIIENMLLLAKVSTL 272


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 3 0|=
-13 13 1|*==
-12 84 39|======*=======
-11 189 207|================================ *
-10 326 384|======================================================= *
-9 336 397|======================================================== *
-8 299 297|=================================================*
-7 175 187|============================== *
-6 132 107|=================*====
-5 64 59|=========*=
-4 53 31|=====*===
-3 31 16|==*===
-2 11 8|=*
-1 13 4|*==
0 4 2|*
1 1 1|*
2 3 0|=
3 4 0|=
4 1 0|=
5 1 0|=
> 6 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 102.2108
P(chi-square) = 1.966e-17

Total sequences searched: 1750

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: