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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Parvibaculum lavamentivorans DS-1  

Data for CP000774  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000774.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000774_0936 CDS_1003969-1005822 102.4 1e-28 1
CP000774_2382 CDS_2582991-2584610 99.7 5.8e-28 1
CP000774_0956 CDS_1032054-1030252 99.1 8.4e-28 1
CP000774_1844 CDS_2007271-2010111 98.6 1.2e-27 1
CP000774_1696 CDS_1840039-1837643 95.9 7.2e-27 1
CP000774_3570 CDS_3841650-3843884 94.4 1.9e-26 1
CP000774_1424 CDS_1558442-1560595 93.5 3.4e-26 1
CP000774_0648 CDS_712845-710860 93.3 3.8e-26 1
CP000774_1061 CDS_1168387-1166858 92.8 5.1e-26 1
CP000774_3135 CDS_3367636-3369042 91.6 1.2e-25 1
CP000774_3457 CDS_3727799-3725685 90.0 3.2e-25 1
CP000774_1927 CDS_2108940-2107369 89.5 4.6e-25 1
CP000774_1117 CDS_1233519-1232011 84.0 1.7e-23 1
CP000774_1960 CDS_2152594-2150054 82.7 3.9e-23 1
CP000774_3233 CDS_3473352-3472219 78.9 4.6e-22 1
CP000774_1355 CDS_1489424-1490290 78.3 6.6e-22 1
CP000774_0393 CDS_425708-427045 75.3 4.9e-21 1
CP000774_0118 CDS_130284-132869 74.2 9.8e-21 1
CP000774_2318 CDS_2506358-2504583 64.6 5.2e-18 1
CP000774_3580 CDS_3858529-3860361 63.6 9.6e-18 1
CP000774_0112 CDS_124320-126167 54.7 3.4e-15 1
CP000774_2259 CDS_2438583-2437177 51.5 2.6e-14 1
CP000774_3112 CDS_3341593-3339254 51.2 3.3e-14 1
CP000774_0945 CDS_1015598-1016998 49.5 9.7e-14 1
CP000774_0597 CDS_660743-659214 49.1 1.3e-13 1
CP000774_3114 CDS_3344359-3343244 48.9 1.5e-13 1
CP000774_2033 CDS_2229462-2228323 45.6 1.3e-12 1
CP000774_2562 CDS_2775763-2778285 44.8 2.1e-12 1
CP000774_0017 CDS_20068-21474 43.7 4.3e-12 1
CP000774_0079 CDS_78675-80807 43.3 5.5e-12 1
CP000774_0431 CDS_467749-465755 41.2 2.2e-11 1
CP000774_1083 CDS_1189701-1191188 32.5 6.6e-09 1
CP000774_3467 CDS_3736255-3739155 31.2 1.5e-08 1
CP000774_2366 CDS_2568110-2569726 29.5 4.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000774_0936 1/1 378 447 .. 1 87 [] 102.4 1e-28
CP000774_2382 1/1 148 213 .. 1 87 [] 99.7 5.8e-28
CP000774_0956 1/1 372 441 .. 1 87 [] 99.1 8.4e-28
CP000774_1844 1/1 276 341 .. 1 87 [] 98.6 1.2e-27
CP000774_1696 1/1 557 626 .. 1 87 [] 95.9 7.2e-27
CP000774_3570 1/1 196 261 .. 1 87 [] 94.4 1.9e-26
CP000774_1424 1/1 478 547 .. 1 87 [] 93.5 3.4e-26
CP000774_0648 1/1 410 479 .. 1 87 [] 93.3 3.8e-26
CP000774_1061 1/1 270 339 .. 1 87 [] 92.8 5.1e-26
CP000774_3135 1/1 231 300 .. 1 87 [] 91.6 1.2e-25
CP000774_3457 1/1 464 533 .. 1 87 [] 90.0 3.2e-25
CP000774_1927 1/1 283 352 .. 1 87 [] 89.5 4.6e-25
CP000774_1117 1/1 260 329 .. 1 87 [] 84.0 1.7e-23
CP000774_1960 1/1 432 497 .. 1 87 [] 82.7 3.9e-23
CP000774_3233 1/1 130 199 .. 1 87 [] 78.9 4.6e-22
CP000774_1355 1/1 48 117 .. 1 87 [] 78.3 6.6e-22
CP000774_0393 1/1 210 277 .. 1 87 [] 75.3 4.9e-21
CP000774_0118 1/1 618 686 .. 1 87 [] 74.2 9.8e-21
CP000774_2318 1/1 228 293 .. 1 87 [] 64.6 5.2e-18
CP000774_3580 1/1 246 311 .. 1 87 [] 63.6 9.6e-18
CP000774_0112 1/1 385 450 .. 1 87 [] 54.7 3.4e-15
CP000774_2259 1/1 259 317 .. 1 87 [] 51.5 2.6e-14
CP000774_3112 1/1 512 583 .. 1 87 [] 51.2 3.3e-14
CP000774_0945 1/1 236 302 .. 1 87 [] 49.5 9.7e-14
CP000774_0597 1/1 266 335 .. 1 87 [] 49.1 1.3e-13
CP000774_3114 1/1 139 203 .. 1 87 [] 48.9 1.5e-13
CP000774_2033 1/1 154 225 .. 1 87 [] 45.6 1.3e-12
CP000774_2562 1/1 463 529 .. 1 87 [] 44.8 2.1e-12
CP000774_0017 1/1 223 286 .. 1 87 [] 43.7 4.3e-12
CP000774_0079 1/1 480 550 .. 1 87 [] 43.3 5.5e-12
CP000774_0431 1/1 294 359 .. 1 87 [] 41.2 2.2e-11
CP000774_1083 1/1 268 338 .. 1 87 [] 32.5 6.6e-09
CP000774_3467 1/1 453 519 .. 1 87 [] 31.2 1.5e-08
CP000774_2366 1/1 304 374 .. 1 87 [] 29.5 4.6e-08

Alignments of top-scoring domains:
CP000774_0936: domain 1 of 1, from 378 to 447: score 102.4, E = 1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL+aI+g++e+L++el+ ++ + +
CP000774_0 378 SKSEFLANMSHELRTPLNAIIGFSEALERELF------GPVGNPR-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey e i++++ +ll+Lind+Ldls+ieag
CP000774_0 417 ---------YREYAEDIHDSGVHLLSLINDILDLSKIEAG 447

CP000774_2382: domain 1 of 1, from 148 to 213: score 99.7, E = 5.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g+a+l+ ++l++ q
CP000774_2 148 AKSAFLANISHEIRTPLNGILGMAQLMAS---------GDLTPGQ-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +etil++++ l +L+nd+Ldls+ieag
CP000774_2 184 ----------KDQIETILDSGKTLMALLNDVLDLSKIEAG 213

CP000774_0956: domain 1 of 1, from 372 to 441: score 99.1, E = 8.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL+aI+g++e+++ +l+ +el++++
CP000774_0 372 SKSEFLANMSHELRTPLNAIIGFSEIMESGLF------GELGSPK-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i+ ++ +ll+Lind+Ld+s+ieag
CP000774_0 411 ---------YKEYAGDIHASGTHLLELINDILDMSKIEAG 441

CP000774_1844: domain 1 of 1, from 276 to 341: score 98.6, E = 1.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+++++g++elLl+ t+l++eq
CP000774_1 276 AKSDFLANMSHEIRTPMNGVLGMTELLLT---------TALNAEQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ et+++++e ll ++nd+Ld s++eag
CP000774_1 312 ----------RKFAETVRESGEALLTIVNDILDVSKLEAG 341

CP000774_1696: domain 1 of 1, from 557 to 626: score 95.9, E = 7.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHELRTPL+aI+g++e++ e++ ++l+++
CP000774_1 557 AKTKFLANMSHELRTPLNAIIGFSEIMSQEMF------GPLGSDR-- 595

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey++ i+ ++++ll+ i+d+Ld+s+ieag
CP000774_1 596 ---------YREYTNDIHGSGRHLLNVIDDILDISKIEAG 626

CP000774_3570: domain 1 of 1, from 196 to 261: score 94.4, E = 1.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+++lLl+ t+l++ q
CP000774_3 196 AKSLFLATMSHEIRTPMNGVIGMTKLLLD---------TKLDPAQ-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e ++ ++e ll++ind+Ld+s+ieag
CP000774_3 232 ----------RSYAEAVRASGEALLNIINDILDYSKIEAG 261

CP000774_1424: domain 1 of 1, from 478 to 547: score 93.5, E = 3.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL+aI+g++e++ el+ ++ e
CP000774_1 478 SKSQFLANMSHELRTPLNAIIGFSEVMNGELF------GPIENER-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y+ i++++ +ll+Lind+Ldls+iea
CP000774_1 517 ---------YKDYVGDIHKSSSHLLSLINDILDLSKIEAD 547

CP000774_0648: domain 1 of 1, from 410 to 479: score 93.3, E = 3.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL+aI+g++e+L+++++ ++l+ +
CP000774_0 410 TKSRFLANMSHELRTPLNAIIGFSEILRMQMF------GALGHPR-- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i +++ ll+Li+d+Ld+s+ieag
CP000774_0 449 ---------YTEYAQLINESGALLLDLISDILDMSKIEAG 479

CP000774_1061: domain 1 of 1, from 270 to 339: score 92.8, E = 5.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g++e++ + ++ + ++
CP000774_1 270 AKSHFLANMSHELRTPLNAIIGFSEVMAS------EIFGKHGVPT-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i r++++ll Lind+Ldlsrieag
CP000774_1 309 ---------YKEYANDINRSGQHLLGLINDVLDLSRIEAG 339

CP000774_3135: domain 1 of 1, from 231 to 300: score 91.6, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHELRTPL+aI+g++e++++el+ ++l+ +
CP000774_3 231 AKTEFLANMSHELRTPLNAILGFSEAMQMELF------GPLGHPR-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++ +ll+L+nd+Ldlsrie +
CP000774_3 270 ---------YVEYMHDIHHAGTHLLSLVNDILDLSRIELE 300

CP000774_3457: domain 1 of 1, from 464 to 533: score 90.0, E = 3.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL+aI+g++e+++ e++ ++l+ +
CP000774_3 464 AKSEFLATMSHELRTPLNAIIGFSETMKLEVF------GPLGHGK-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i +++ +ll+L++d+Ld+sr e+g
CP000774_3 503 ---------YAEYAKDINNSGTHLLDLVSDILDISRVESG 533

CP000774_1927: domain 1 of 1, from 283 to 352: score 89.5, E = 4.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e + ++l+
CP000774_1 283 AKSQFLATMSHELRTPLNAILGFSEIMAAETF------GPLNNAR-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y++ i +++++ll+Lind+Ld++r +ag
CP000774_1 322 ---------YSDYVQDIFKSGKHLLSLINDVLDFTRVDAG 352

CP000774_1117: domain 1 of 1, from 260 to 329: score 84.0, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla +sHELRTPL+aI+g++e++ ++++ ++ + ++
CP000774_1 260 AKNDFLAIMSHELRTPLNAIIGFSEIISNQMF------GPVGQPK-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y i++++ +ll++ind+Ld+s++eag
CP000774_1 299 ---------YVDYAADIRSSGAHLLSIINDILDISKAEAG 329

CP000774_1960: domain 1 of 1, from 432 to 497: score 82.7, E = 3.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTP+++++g+a+lLl ++l+ eq
CP000774_1 432 AKSAFLATMSHELRTPMNGVLGMADLLLS---------GPLTQEQ-- 467

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + ti++++e ll ++nd+Ldls++eag
CP000774_1 468 ----------RDGVTTIRESGECLLTILNDILDLSKLEAG 497

CP000774_3233: domain 1 of 1, from 130 to 199: score 78.9, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g++++++ ++ + +
CP000774_3 130 AKSNFLANMSHELRTPLNAIIGFSDIIRF------QRFGSVGNSR-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y + i +++ +ll++ind+Ldl++i+ag
CP000774_3 169 ---------YQDYAKDINESGIHLLSIINDILDLAKIDAG 199

CP000774_1355: domain 1 of 1, from 48 to 117: score 78.3, E = 6.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL+aI+g++e ++ a +++ se++
CP000774_1 48 TKSEFLANMSHELRTPLNAIIGFSEFIQH-----IAASGKPSEKT-- 87

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey i ++++ll++i+d+Ld+++ie+g
CP000774_1 88 ----------GEYATHIAGAGRHLLNIISDILDIAKIESG 117

CP000774_0393: domain 1 of 1, from 210 to 277: score 75.3, E = 4.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a +sHEL+TPL++++g++++L+ +++++++++
CP000774_0 210 MRADFVAFASHELKTPLASLSGFIDTLRG---------HAKDDPEAR 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++a r+++Li+dlL lsrie
CP000774_0 248 ----------DKFLGIMSDQATRMRHLIDDLLSLSRIELR 277

CP000774_0118: domain 1 of 1, from 618 to 686: score 74.2, E = 9.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef++++s +LRTPLt I+g+ e+L++e++ ++ls+ q
CP000774_0 618 LKSEFISHVSYQLRTPLTNILGFGEILETEMF------GPLSPRQ-- 656

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + il+++e l + +nd+Ldl+ ieag
CP000774_0 657 ----------HEYMQGILESSETLIDVVNDILDLAVIEAG 686

CP000774_2318: domain 1 of 1, from 228 to 293: score 64.6, E = 5.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++aI +++ L++ +l e
CP000774_2 228 SKSRFLAHASHDLRQPIHAIGLFTACLRD---------LDLETEA-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i+++a++ +rL+ lLd+sr++ g
CP000774_2 264 ----------RQHVRSIDDAARSVSRLLGSLLDISRLDVG 293

CP000774_3580: domain 1 of 1, from 246 to 311: score 63.6, E = 9.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++aI ++a L++ +l++e
CP000774_3 246 SKSRFLAHASHDLRQPIHAIGLFAACLRD---------IDLGAEA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++++a++ +rL+ lLd+sr++ g
CP000774_3 282 ----------AQLVGSVDNAARSVSRLLGSLLDISRLDVG 311

CP000774_0112: domain 1 of 1, from 385 to 450: score 54.7, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++HE+++PLt++r ++e +++e+ +
CP000774_0 385 AIESFAADVAHEIKNPLTSLRSAIESFTI----------TKDEKSK- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+i+++++r++rL++d+ sr++a+
CP000774_0 421 ----------ARLMEIIQEDVRRIDRLLSDISNASRLDAE 450

CP000774_2259: domain 1 of 1, from 259 to 317: score 51.5, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt ++ + +L e
CP000774_2 259 QRTAMLAGVSHDLRTPLTRFKLQLAMLGE------------------ 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++ ++r+++d L+++r +g
CP000774_2 288 ----------GPEIDELRADINEMERMLDDYLEFARGHQG 317

CP000774_3112: domain 1 of 1, from 512 to 583: score 51.2, E = 3.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ + + +++++
CP000774_3 512 AWADVARRIAHEIKNPLTPIQLSAERLRRKY-----SKEITTDPDV- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti+r+++ + r+++++ ++r+ +
CP000774_3 553 ---------FEQCTQTIIRQVNDIGRMVDEFSSFARMPSA 583

CP000774_0945: domain 1 of 1, from 236 to 302: score 49.5, E = 9.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + n++H+LR PL+ +r +e+ l+ +e+s+++
CP000774_0 236 GMRQVTDNIAHDLRSPLNRLRNRLEVTLM---------QEASADD-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++le+ + ea+ ll n lL ++r+eag
CP000774_0 272 ---------YKQALEKTIAEADNLLGTFNALLMIARAEAG 302

CP000774_0597: domain 1 of 1, from 266 to 335: score 49.1, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++n+ H+LRTPLt I+g++e++++ + ++++ +
CP000774_0 266 RSQSFFSNVNHDLRTPLTHIIGFSEMMKN------ERLGPMGTDR-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++ ll++i+dlL ++ +e
CP000774_0 305 ---------YKEYASDIYSSGTMLLDMIEDLLGIAEAEMD 335

CP000774_3114: domain 1 of 1, from 139 to 203: score 48.9, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+HE+++PL++Irg+a+lL+ s+++
CP000774_3 139 SVTGMAAILAHEIKNPLSGIRGAAQLLEL----------SGSPDD-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ i +e++r+ +L++++ +s +
CP000774_3 174 ----------KTLTRLICEETDRICKLVDRMEVFSDERPV 203

CP000774_2033: domain 1 of 1, from 154 to 225: score 45.6, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++l+HEL++PLtaI+ y+ ++ + e ++ ++
CP000774_2 154 EMGQMTSALAHELNQPLTAIMNYVRAAAR--------TIEGLDDPAA 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ re+++++ +++ r ++i++l+d+ ++
CP000774_2 193 IRA-------RELIDKAAEQTGRAGQIIRRLRDFVEKREA 225

CP000774_2562: domain 1 of 1, from 463 to 529: score 44.8, E = 2.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl+ ++ ++++
CP000774_2 463 AVGQLAGGVAHDFNNLLTAIIGFCDLLLA--------RHQAGDPS-- 499

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L ++lL +sr ++
CP000774_2 500 ----------FADVVQIKQNANRAANLTRQLLAFSRRQTL 529

CP000774_0017: domain 1 of 1, from 223 to 286: score 43.7, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL +I++ ++ L + + ++e+++
CP000774_0 223 ALDGLAAAAAHELGTPLGTISLVTKELMR---------GQMGEQEM- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++++aer+ +++++l sr g
CP000774_0 260 ----------KEDLALLHSQAERCKDILSRL---SRQPDG 286

CP000774_0079: domain 1 of 1, from 480 to 550: score 43.3, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HELR+PL++I+++++ L+ l+++ + + e +
CP000774_0 480 ALGQMSASIAHELRQPLNTISLAVQNLEF-----LLESLDFDREAA- 520

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++l ++er ++ i++++ + r g
CP000774_0 521 ----------AKKTKRVLAQVERASDVIDRMRRFGRKSVG 550

CP000774_0431: domain 1 of 1, from 294 to 359: score 41.2, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl +sHE R PL ++r +a L + ++ +e q+
CP000774_0 294 AKQEFLDIISHEVREPLDGLRNMALYLGD---------EAVNETQI- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i++ ++ l+rL++d+ d+s ie+
CP000774_0 331 -----------KIAASIEETSQLLRRLVDDMIDFSEIESK 359

CP000774_1083: domain 1 of 1, from 268 to 338: score 32.5, E = 6.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE ++PL a+ ++ e+ l++l +++ +
CP000774_1 268 TLGELTASIAHEVNQPLMAVVTNGEAGLRWL-------RRDPPDLT- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ ++ + e++r +++ +++++ r
CP000774_1 307 --------EVEMAIGQVVAEGRRAGEIVKRVREFLRKAPS 338

CP000774_3467: domain 1 of 1, from 453 to 519: score 31.2, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +++g+++lLl+ +l+ +r+
CP000774_3 453 AIGKLTGGVAHDFNNLLQVVSGNLQLLLK----------DLDGNERA 489

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +l ++r ++L ++lL + r +
CP000774_3 490 ----------QRRITNALAGVDRGSKLASQLLAFGRRQPL 519

CP000774_2366: domain 1 of 1, from 304 to 374: score 29.5, E = 4.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HE ++P++++ ++a + l++l+ e +e +
CP000774_2 304 EMEALSASIAHEVNQPVASMATNANAGLRWLE------REYPEAH-- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +l +i r+++r ++i+ ++ + +++
CP000774_2 343 --------ETKAALTRIVRDGHRAGDIIRGVRSMFNRDSQ 374


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 3 0|=
-13 25 2|*==
-12 124 83|======*====
-11 297 431|========================= *
-10 631 799|===================================================== *
-9 703 825|==========================================================*
-8 655 618|===================================================*===
-7 483 389|================================*========
-6 292 224|==================*======
-5 181 123|==========*=====
-4 99 65|=====*===
-3 50 34|==*==
-2 24 18|=*
-1 17 9|*=
0 5 4|*
1 4 2|*
2 2 1|*
3 2 0|=
> 4 39 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 219.0215
P(chi-square) = 1.563e-310

Total sequences searched: 3636

Whole sequence top hits:
tophits_s report:
Total hits: 34
Satisfying E cutoff: 34
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 34
Satisfying E cutoff: 34
Total memory: 34K


Acknowledgements:

This research is funded by:

Developed by: