Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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32 projects found  

2 accessions found for Campylobacter hominis ATCC BAA-381  

Data for CP000776  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000776.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000776_0604 CDS_586773-590930 104.2 1.5e-29 1
CP000776_0495 CDS_483209-484375 32.4 3.1e-09 1
CP000776_0918 CDS_915733-916971 32.2 3.5e-09 1
CP000776_0379 CDS_366347-364998 30.7 9.5e-09 1
CP000776_0701 CDS_690337-691473 27.0 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000776_0604 1/1 404 469 .. 1 87 [] 104.2 1.5e-29
CP000776_0495 1/1 188 248 .. 1 87 [] 32.4 3.1e-09
CP000776_0918 1/1 208 266 .. 1 87 [] 32.2 3.5e-09
CP000776_0379 1/1 241 300 .. 1 79 [. 30.7 9.5e-09
CP000776_0701 1/1 161 227 .. 1 87 [] 27.0 1.1e-07

Alignments of top-scoring domains:
CP000776_0604: domain 1 of 1, from 404 to 469: score 104.2, E = 1.5e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g++elL++ tel+eeq
CP000776_0 404 AKSIFLANMSHEIRTPLNGVIGFTELLRN---------TELDEEQ-- 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti++++e ll +in++Ld s+ie++
CP000776_0 440 ----------QDYVDTIEQSSENLLTIINNILDVSKIESN 469

CP000776_0495: domain 1 of 1, from 188 to 248: score 32.4, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ + HE++TPL++I++ +e+ +++
CP000776_0 188 SLNSFIKDTTHEINTPLSVILMSIEMFENYP---------------- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i+ +a+ l++L ++l l ++
CP000776_0 219 ----------EKYLSNIKIAAKTLSNLYENLVNLNLKTTQ 248

CP000776_0918: domain 1 of 1, from 208 to 266: score 32.2, E = 3.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+n+ HEL+TP+t r ++e+++e
CP000776_0 208 SRQLFLRNIMHELKTPITKGRITVEMIEE------------------ 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ erl++Lin++ +r+ +g
CP000776_0 237 ----------GKNRNRLISVFERLENLINEFAAVERATSG 266

CP000776_0379: domain 1 of 1, from 241 to 300: score 30.7, E = 9.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sHE+++P++ I +++++L++ d +++ +
CP000776_0 241 QLETILSSISHEFKNPIAIIETASQTLQK--------DKNMPRNLQ- 278

peLRledpeyreyletilreaerllrLindlL<-*
++l++i + + +Li+ ++
CP000776_0 279 ----------DKFLNKINANCQKIVDLIDKIR 300

CP000776_0701: domain 1 of 1, from 161 to 227: score 27.0, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL++++ ++ l e++
CP000776_0 161 YQKELFIGIAHELKTPLAVMKSKNDVTLI---------KERDNAR-- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+l++ +++++++i+++L++ r e
CP000776_0 197 ---------YIEALKVNNATIDSMNKMISQILQIGRQEGA 227


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 26 0|=====
-13 72 1|*===========
-12 109 38|======*============
-11 203 199|=================================*
-10 306 369|=================================================== *
-9 294 381|================================================= *
-8 249 285|========================================== *
-7 163 180|============================ *
-6 117 103|=================*==
-5 62 56|=========*=
-4 28 30|====*
-3 20 16|==*=
-2 14 8|=*=
-1 6 4|*
0 1 2|*
1 1 1|*
> 2 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 174.2593
P(chi-square) = 3.637e-32

Total sequences searched: 1682

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: