Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

3 accessions found for Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'  

Data for CP000779  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000779.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000779_0042 CDS_59055-57277 38.1 2.6e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000779_0042 1/1 366 434 .. 1 87 [] 38.1 2.6e-12

Alignments of top-scoring domains:
CP000779_0042: domain 1 of 1, from 366 to 434: score 38.1, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++ +sH+L+ P+ ++ +++ +Lle++ +++s++ +
CP000779_0 366 TKDKFFSIISHDLKGPIGGMNTFIGMLLEDM-------ETRSPKRM- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++++ +L+++lL+ +r +++
CP000779_0 405 ----------LNDLNILHQSSGEVYALLENLLTWARSQTN 434


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 2 1|*=
-11 5 6|=====*
-10 7 12|======= *
-9 12 12|===========*
-8 14 9|========*=====
-7 2 6|== *
-6 8 3|==*=====
-5 4 1|*===
-4 0 1|*
-3 1 0|=
> -2 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 4.8853
P(chi-square) = 0.1804

Total sequences searched: 57

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: