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1 accessions found for Candidatus Methanoregula boonei 6A8  

Data for CP000780  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000780.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000780_1802 CDS_1891362-1892828 52.2 1.1e-14 1
CP000780_1113 CDS_1119490-1121280 48.1 1.6e-13 1
CP000780_0336 CDS_332107-329792 29.7 2.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000780_1802 1/1 253 321 .. 1 87 [] 52.2 1.1e-14
CP000780_1113 1/1 365 434 .. 1 87 [] 48.1 1.6e-13
CP000780_0336 1/1 557 623 .. 1 87 [] 29.7 2.8e-08

Alignments of top-scoring domains:
CP000780_1802: domain 1 of 1, from 253 to 321: score 52.2, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL +Irg+a l +e + ++ ++++
CP000780_1 253 ELERFTYTVSHDLKSPLITIRGFAGLVEE---------DIRNNDTAA 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l++i+ ++e ++ L+ dlL lsri+
CP000780_1 291 ---------VKRDLDRIDAATEKMEMLLKDLLNLSRIGRI 321

CP000780_1113: domain 1 of 1, from 365 to 434: score 48.1, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++++HELRTPL ++gy+ lLl + ++ +
CP000780_1 365 RRREMMRAVAHELRTPLQPVLGYLNLLLQ----------DPPAFGVT 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e r++le+ ++++r +++in++L+ls +e++
CP000780_1 402 EET-------RQILERCAKSVDRERQIINQMLELSVLEEE 434

CP000780_0336: domain 1 of 1, from 557 to 623: score 29.7, E = 2.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +++ sH++++ Lta+ g++el+++ + +++++
CP000780_0 557 KLSILASVTSHDINNQLTALDGFLELAKA---------EGENPKTT- 593

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+++++++er++ ++ l++++ +++
CP000780_0 594 ----------GEYLQKAQKAVERIRYQVGFLREYESLGSH 623


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 13 0|==
-13 50 1|*======
-12 170 55|======*===============
-11 329 290|====================================*=====
-10 449 538|========================================================= *
-9 458 556|==========================================================*
-8 363 416|============================================== *
-7 245 262|=============================== *
-6 144 151|==================*
-5 84 82|==========*
-4 47 44|=====*
-3 21 23|==*
-2 21 12|=*=
-1 7 6|*
0 6 3|*
1 5 1|*
2 4 0|=
3 3 0|=
4 0 0|
5 2 0|=
6 3 0|=
7 5 0|=
8 2 0|=
9 2 0|=
10 0 0|
11 4 0|=
12 2 0|=
13 2 0|=
14 1 0|=
15 2 0|=
> 16 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 284.6125
P(chi-square) = 0

Total sequences searched: 2450

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: