Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

2 accessions found for Xanthobacter autotrophicus Py2  

Data for CP000782  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000782.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000782_0157 CDS_180114-181460 51.9 1.7e-15 1
CP000782_0148 CDS_170919-172295 46.5 5.4e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000782_0157 1/1 229 294 .. 1 87 [] 51.9 1.7e-15
CP000782_0148 1/1 245 303 .. 1 87 [] 46.5 5.4e-14

Alignments of top-scoring domains:
CP000782_0157: domain 1 of 1, from 229 to 294: score 51.9, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L +el +e +e++r
CP000782_0 229 AERGFAANSAHELRTPIAAALAQTQRLMAEL-------PEGPEQER- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ti +++rl+rL + lL+l+++e
CP000782_0 268 -------------ARTIAGALRRLSRLSEKLLQLAKAEGA 294

CP000782_0148: domain 1 of 1, from 245 to 303: score 46.5, E = 5.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+ +++HELRTPL+++++ + L + s+e+
CP000782_0 245 ALKDFAGDAAHELRTPLAVMMLSIGKLPD------------SPEK-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +a+r+ rL+n++Ld+s + a
CP000782_0 278 --------------AKLEVDAQRMKRLVNQMLDMSYATAL 303


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 0 0|
-12 11 6|=====*=====
-11 31 34|=============================== *
-10 48 63|================================================ *
-9 53 65|===================================================== *
-8 45 49|============================================= *
-7 47 30|=============================*=================
-6 15 17|=============== *
-5 15 9|========*======
-4 12 5|====*=======
-3 2 2|=*
-2 3 1|*==
-1 2 0|==
0 0 0|
1 0 0|
> 2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 30.1084
P(chi-square) = 0.0002023

Total sequences searched: 289

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: