Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Cronobacter sakazakii ATCC BAA-894  

Data for CP000783  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000783.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000783_1773 CDS_1772573-1769892 104.4 3.3e-29 1
CP000783_0499 CDS_492035-489276 100.6 3.8e-28 1
CP000783_0931 CDS_941401-944322 82.8 4.3e-23 1
CP000783_2824 CDS_2861780-2860467 81.1 1.3e-22 1
CP000783_3504 CDS_3536731-3534392 80.2 2.3e-22 1
CP000783_0674 CDS_672871-674262 74.0 1.3e-20 1
CP000783_3994 CDS_4079007-4077634 64.5 6.5e-18 1
CP000783_1098 CDS_1103035-1101611 62.3 2.8e-17 1
CP000783_3919 CDS_3995580-3994531 61.7 4.1e-17 1
CP000783_4125 CDS_4219774-4221174 60.8 7.1e-17 1
CP000783_4007 CDS_4087600-4088961 59.3 1.9e-16 1
CP000783_4108 CDS_4202700-4201219 59.2 2.1e-16 1
CP000783_3251 CDS_3278327-3276903 58.9 2.5e-16 1
CP000783_2575 CDS_2592949-2595633 57.2 7.7e-16 1
CP000783_4205 CDS_4303852-4305198 55.8 1.9e-15 1
CP000783_3477 CDS_3513861-3514925 51.3 3.6e-14 1
CP000783_0920 CDS_927303-928739 46.0 1.2e-12 1
CP000783_1908 CDS_1898726-1900018 40.2 5.1e-11 1
CP000783_2157 CDS_2151453-2152958 27.9 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000783_1773 1/1 268 333 .. 1 87 [] 104.4 3.3e-29
CP000783_0499 1/1 292 357 .. 1 87 [] 100.6 3.8e-28
CP000783_0931 1/1 494 559 .. 1 87 [] 82.8 4.3e-23
CP000783_2824 1/1 203 269 .. 1 87 [] 81.1 1.3e-22
CP000783_3504 1/1 282 347 .. 1 87 [] 80.2 2.3e-22
CP000783_0674 1/1 234 302 .. 1 87 [] 74.0 1.3e-20
CP000783_3994 1/1 238 300 .. 1 87 [] 64.5 6.5e-18
CP000783_1098 1/1 247 311 .. 1 87 [] 62.3 2.8e-17
CP000783_3919 1/1 129 186 .. 1 79 [. 61.7 4.1e-17
CP000783_4125 1/1 247 313 .. 1 87 [] 60.8 7.1e-17
CP000783_4007 1/1 238 304 .. 1 87 [] 59.3 1.9e-16
CP000783_4108 1/1 262 328 .. 1 87 [] 59.2 2.1e-16
CP000783_3251 1/1 255 320 .. 1 87 [] 58.9 2.5e-16
CP000783_2575 1/1 663 730 .. 1 87 [] 57.2 7.7e-16
CP000783_4205 1/1 233 293 .. 1 87 [] 55.8 1.9e-15
CP000783_3477 1/1 136 196 .. 1 87 [] 51.3 3.6e-14
CP000783_0920 1/1 246 311 .. 1 87 [] 46.0 1.2e-12
CP000783_1908 1/1 211 271 .. 1 87 [] 40.2 5.1e-11
CP000783_2157 1/1 267 330 .. 1 87 [] 27.9 1.5e-07

Alignments of top-scoring domains:
CP000783_1773: domain 1 of 1, from 268 to 333: score 104.4, E = 3.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I+g+++l+l+ t+l++eq
CP000783_1 268 AKSAFLANMSHEIRTPMNGILGMTQLCLD---------TDLNSEQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl + ++a++ll++i+d+Ld+s+ieag
CP000783_1 304 ----------REYLTLVMSSAQSLLHIIDDILDFSKIEAG 333

CP000783_0499: domain 1 of 1, from 292 to 357: score 100.6, E = 3.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ t+l++ q
CP000783_0 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TDLTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000783_0 328 ----------RDHLNTIERSANNLLSIINDVLDFSKLEAG 357

CP000783_0931: domain 1 of 1, from 494 to 559: score 82.8, E = 4.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +el+
CP000783_0 494 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------QELPKGV-- 529

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++ ll++i+d+Ld+s+ie++
CP000783_0 530 ----------DRLVTAMHNSSSLLLKIISDILDFSKIESE 559

CP000783_2824: domain 1 of 1, from 203 to 269: score 81.1, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l + r
CP000783_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMHE---------QTLEGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP000783_2 240 ----------EKALHTMREQTFRMEGLVKQLLTLSKIEAA 269

CP000783_3504: domain 1 of 1, from 282 to 347: score 80.2, E = 2.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tels+eq
CP000783_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELSAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ +ie
CP000783_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKIERR 347

CP000783_0674: domain 1 of 1, from 234 to 302: score 74.0, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl+++sHEL+TPL+++r +elL +++ ++l++eq
CP000783_0 234 QRHQFLRHISHELKTPLASMREGTELLADQV------VGPLTAEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e+++ +++ l+ Li++lLd+ r ag
CP000783_0 273 ----------REVVEILDTSSRNLQTLIEQLLDYNRKLAG 302

CP000783_3994: domain 1 of 1, from 238 to 300: score 64.5, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPLt +++ + lL++ +++
CP000783_3 238 TQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000783_3 274 -------------LERIETEAHRLDSMINDLLVMSRNQQK 300

CP000783_1098: domain 1 of 1, from 247 to 311: score 62.3, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e++++++ ++e
CP000783_1 247 MRQAFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000783_1 285 -------------VASLQAEVGTLTKLVDDLHQLSLSDEG 311

CP000783_3919: domain 1 of 1, from 129 to 186: score 61.7, E = 4.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000783_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSR----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000783_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP000783_4125: domain 1 of 1, from 247 to 313: score 60.8, E = 7.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f ++++HELRTP++ +++ ++ +l+ e++ +
CP000783_4 247 KLSDFSSDIAHELRTPVSNLMMQTQFALA---------KERDVSH-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l l+e++rl+r+ +d+L l+r e+g
CP000783_4 283 ---------YREILFANLEELKRLSRMTSDMLFLARSEHG 313

CP000783_4007: domain 1 of 1, from 238 to 304: score 59.3, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l ++s ++
CP000783_4 238 QLTRFADDLAHELRTPVNILLGQNQVALQ---------RPRSVQE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l ++e+e++ rLi+++L l+r++++
CP000783_4 274 ---------YQSLLAGNIEELEQMTRLIENILFLARADHQ 304

CP000783_4108: domain 1 of 1, from 262 to 328: score 59.2, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t + + +e++l ++++ ++
CP000783_4 262 RQANFSADIAHEIRTPITNLVTQTEIALS---------QDRTQREL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e +r+ ++++d+L l++++++
CP000783_4 299 ----------EDVLYSSLEEYNRMTKMVSDMLFLAQADNN 328

CP000783_3251: domain 1 of 1, from 255 to 320: score 58.9, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL++Irg+ae+L+e ++ ++
CP000783_3 255 YIEQYVHALTHELKSPLAGIRGAAEILRE---------SPPPAVA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + il++ r+++L++ lL+ +++e+
CP000783_3 291 ----------QRFCDNILEQNARMQALVEKLLQQAKLENR 320

CP000783_2575: domain 1 of 1, from 663 to 730: score 57.2, E = 7.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
CP000783_2 663 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSNH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ + rL+n+lLd++ri++g
CP000783_2 701 ----------APQASEIRQHVLNTTRLVNNLLDMARIQSG 730

CP000783_4205: domain 1 of 1, from 233 to 293: score 55.8, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP000783_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------GD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000783_4 264 ----------GYLAESINKDIEECNDIIEQFIDYLRTGQE 293

CP000783_3477: domain 1 of 1, from 136 to 196: score 51.3, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el++ +
CP000783_3 136 QERLFTADAAHELRTPLAGIRLHLELMEQSG---------------- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++rl + +++lL lsr+++
CP000783_3 167 ----------VSQATPLLARIDRLMHTVEQLLMLSRAGQA 196

CP000783_0920: domain 1 of 1, from 246 to 311: score 46.0, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ ++ q
CP000783_0 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SPDPAQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re l+ + +++ +L ++lL+l+ ++
CP000783_0 281 ---------WRESLQAMSTTLDQTIDLTERLLQLATLRRA 311

CP000783_1908: domain 1 of 1, from 211 to 271: score 40.2, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls +
CP000783_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSTAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000783_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP000783_2157: domain 1 of 1, from 267 to 330: score 27.9, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l +l H L+TPL++++ ++ L++ ++ + eq+
CP000783_2 267 KYRTTLTDLTHSLKTPLSVLQSTLRSLRT---------GKTDVEQA- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ r++++i L + +++g
CP000783_2 304 -------------EPVMLEQISRISQQIGYYLHRASMRSG 330


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 3 0|=
-14 26 0|==
-13 94 3|*=======
-12 244 97|=======*===========
-11 430 507|================================== *
-10 736 940|========================================================= *
-9 753 971|==========================================================*
-8 708 727|=======================================================*
-7 518 458|===================================*====
-6 321 263|====================*====
-5 189 144|===========*===
-4 91 77|=====*=
-3 56 40|===*=
-2 27 21|=*=
-1 21 11|*=
0 16 5|*=
1 12 3|*
2 5 1|*
3 4 0|=
4 1 0|=
5 2 0|=
> 6 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 393.8079
P(chi-square) = 0

Total sequences searched: 4277

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: