hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000783.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000783_1467 CDS_1466195-1464387 81.3 1.2e-23 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000783_1467 1/1 390 457 .. 1 70 [] 81.3 1.2e-23
Alignments of top-scoring domains:
CP000783_1467: domain 1 of 1, from 390 to 457: score 81.3, E = 1.2e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ p+e re l +i
CP000783_1 390 ERAAIARELHDSIAQSLSCMKMQISCLQMQG--DALPQESRELLGQI 434
relarealaevRrllgdLRpaal<-*
r+ ++ + +++R+ll+++R +
CP000783_1 435 RHELNASWRQLRELLTTFRLQLN 457
Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 38 0|===
-13 138 0|==========
-12 170 47|===*=========
-11 239 392|================== *
-10 643 909|============================================== *
-9 789 1032|========================================================= *
-8 648 796|=============================================== *
-7 506 500|===================================*=
-6 378 283|====================*======
-5 305 151|==========*===========
-4 166 79|=====*======
-3 100 40|==*=====
-2 60 20|=*===
-1 40 10|*==
0 27 5|*=
1 14 2|*
2 6 1|*
3 2 0|=
4 5 0|=
5 1 0|=
6 0 0|
> 7 2 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1143.9340
P(chi-square) = 0
Total sequences searched: 4277
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
