Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Cronobacter sakazakii ATCC BAA-894  

Data for CP000785  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000785.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000785_0015 CDS_12101-13279 37.2 1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000785_0015 1/1 169 232 .. 1 87 [] 37.2 1e-11

Alignments of top-scoring domains:
CP000785_0015: domain 1 of 1, from 169 to 232: score 37.2, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +a ++HELR PLta +g ++ +l+ + +++
CP000785_0 169 LRASHVA-MAHELRSPLTAAMGRLQGMLD---------GVFPSDP-- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l + ++++ l+rL ++l ls ++ag
CP000785_0 204 -----------QQLAMVMKQLQLLNRLTDELHLLSLADAG 232


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 5 0|=====
-12 7 2|=*=====
-11 16 15|==============*=
-10 25 27|========================= *
-9 13 28|============= *
-8 20 21|====================*
-7 14 13|============*=
-6 10 7|======*===
-5 6 4|===*==
-4 3 2|=*=
-3 2 1|*=
-2 2 0|==
> -1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 9.7964
P(chi-square) = 0.08122

Total sequences searched: 127

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: