Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
19 projects found  

3 accessions found for Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'  

Data for CP000787  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000787.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000787_0202 CDS_207477-209138 74.7 5.4e-22 1
CP000787_0149 CDS_148912-150906 72.3 2.6e-21 1
CP000787_0008 CDS_10668-8344 52.7 9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000787_0202 1/1 180 245 .. 1 87 [] 74.7 5.4e-22
CP000787_0149 1/1 333 399 .. 1 87 [] 72.3 2.6e-21
CP000787_0008 1/1 546 614 .. 1 87 [] 52.7 9e-16

Alignments of top-scoring domains:
CP000787_0202: domain 1 of 1, from 180 to 245: score 74.7, E = 5.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sH++R+PL++++g++e++++ ++ +e
CP000787_0 180 AKRDFIAAISHDIRNPLNSLLGMSEMIKD---------QPITEVV-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i++++e +l+L+nd +lsr+e++
CP000787_0 216 ----------HSYVDHIKNAGEVILNLVNDTIELSRLEEN 245

CP000787_0149: domain 1 of 1, from 333 to 399: score 72.3, E = 2.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks f++ + HELRTPL+a++g++++L + d++l+e
CP000787_0 333 SKSVFFSKITHELRTPLHAVIGFSQILGK--------DPNLPEHL-- 369

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++ + +ll +ind+Ldls+ieag
CP000787_0 370 ----------KGFVNSLYENGVHLLGMINDILDLSKIEAG 399

CP000787_0008: domain 1 of 1, from 546 to 614: score 52.7, E = 9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++n+sHELR P+t Irgy+e + ++ + + + e++
CP000787_0 546 LQHEFISNVSHELRSPMTNIRGYLEFFKSDS------SLPFNKEHI- 585

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+i++ a+rl+ Li++lL l+ ++
CP000787_0 586 -----------NMLEVIDKNAKRLSFLIENLLKLTTSREK 614


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 8 0|====
-12 12 6|==*===
-11 22 32|=========== *
-10 61 60|=============================*=
-9 57 62|============================= *
-8 49 46|======================*==
-7 29 29|==============*
-6 14 17|======= *
-5 8 9|====*
-4 9 4|=*===
-3 0 2|*
-2 1 1|*
-1 1 0|=
> 0 4 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 9.9925
P(chi-square) = 0.189

Total sequences searched: 276

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: