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3 accessions found for Vibrio harveyi ATCC BAA-1116  

Data for CP000789  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000789.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000789_2113 CDS_2211644-2208480 98.4 1.3e-27 1
CP000789_3405 CDS_3581164-3583962 94.3 2e-26 1
CP000789_1529 CDS_1628443-1630863 92.2 7.6e-26 1
CP000789_2108 CDS_2202411-2204894 82.7 3.8e-23 1
CP000789_1817 CDS_1921423-1923003 82.6 4e-23 1
CP000789_2207 CDS_2303681-2305411 78.3 6.9e-22 1
CP000789_0959 CDS_1032999-1034297 76.6 2.1e-21 1
CP000789_3306 CDS_3461416-3464802 76.0 2.9e-21 1
CP000789_0869 CDS_934795-937155 69.1 2.7e-19 1
CP000789_0526 CDS_569749-568739 58.7 2.3e-16 1
CP000789_2686 CDS_2821709-2822989 58.3 3.1e-16 1
CP000789_0151 CDS_167562-164029 55.5 1.9e-15 1
CP000789_3053 CDS_3195308-3194271 54.6 3.5e-15 1
CP000789_0137 CDS_148962-150368 50.4 5.5e-14 1
CP000789_0563 CDS_607767-609059 50.0 7e-14 2
CP000789_2167 CDS_2263116-2265158 43.6 4.6e-12 1
CP000789_2659 CDS_2790030-2792579 30.3 2.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000789_2113 1/1 395 460 .. 1 87 [] 98.4 1.3e-27
CP000789_3405 1/1 290 355 .. 1 87 [] 94.3 2e-26
CP000789_1529 1/1 352 417 .. 1 87 [] 92.2 7.6e-26
CP000789_2108 1/1 460 525 .. 1 87 [] 82.7 3.8e-23
CP000789_1817 1/1 164 229 .. 1 87 [] 82.6 4e-23
CP000789_2207 1/1 214 279 .. 1 87 [] 78.3 6.9e-22
CP000789_0959 1/1 205 272 .. 1 87 [] 76.6 2.1e-21
CP000789_3306 1/1 459 527 .. 1 87 [] 76.0 2.9e-21
CP000789_0869 1/1 282 347 .. 1 87 [] 69.1 2.7e-19
CP000789_0526 1/1 117 182 .. 1 87 [] 58.7 2.3e-16
CP000789_2686 1/1 227 292 .. 1 87 [] 58.3 3.1e-16
CP000789_0151 1/1 822 887 .. 1 87 [] 55.5 1.9e-15
CP000789_3053 1/1 122 188 .. 1 87 [] 54.6 3.5e-15
CP000789_0137 1/1 249 311 .. 1 87 [] 50.4 5.5e-14
CP000789_0563 2/2 222 282 .. 1 87 [] 46.6 6.4e-13
CP000789_2167 1/1 449 516 .. 1 87 [] 43.6 4.6e-12
CP000789_2659 1/1 461 530 .. 1 87 [] 30.3 2.6e-08

Alignments of top-scoring domains:
CP000789_2113: domain 1 of 1, from 395 to 460: score 98.4, E = 1.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g +e+L + t l++ q
CP000789_2 395 AKSSFLANMSHEIRTPLNGVIGISEVLSD---------TSLTATQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+ +++ ll+Lind+Ld+s+ie+g
CP000789_2 431 ----------KDYVDTIETSSQLLLSLINDILDFSKIESG 460

CP000789_3405: domain 1 of 1, from 290 to 355: score 94.3, E = 2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t ls q
CP000789_3 290 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TQLSNSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll++ind+Ld+s++eag
CP000789_3 326 ----------TDYLQTIEKSANNLLNIINDILDFSKLEAG 355

CP000789_1529: domain 1 of 1, from 352 to 417: score 92.2, E = 7.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla+lsHE+RTP+++++g+a++Ll+ t l++eq
CP000789_1 352 AKTAFLATLSHEIRTPMNGVLGTAQILLK---------TQLTDEQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t++++++++ L+n++Ld+s+ie+g
CP000789_1 388 ----------RKHLNTLYDSGDHMMTLLNEILDYSKIEQG 417

CP000789_2108: domain 1 of 1, from 460 to 525: score 82.7, E = 3.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++++L + + ++ eq
CP000789_2 460 AKSAFLATMSHEIRTPLNGLLGMLQILND---------DIRDLEQ-- 495

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +l+++e+ll+++nd+Ldl++ e+
CP000789_2 496 ----------RKVLRLALNSGEHLLSILNDILDLAKVESD 525

CP000789_1817: domain 1 of 1, from 164 to 229: score 82.6, E = 4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ef+a++ HELRTPL++++g a+lL + t l++eq
CP000789_1 164 ATKEFVAMVNHELRTPLNGVLGSADLLDK---------TLLDDEQ-- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++++ l+ +indlLd+s++ ag
CP000789_1 200 ----------QQYLSNLIHSGDLLRVIINDLLDFSKMNAG 229

CP000789_2207: domain 1 of 1, from 214 to 279: score 78.3, E = 6.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efla++sHE+RTPL++++g++++L+ ++l+e q
CP000789_2 214 SKPEFLAMMSHEIRTPLNSVLGMLDILRQ---------STLTESQ-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ ++ +a+ ll++i+d+Ldls+ie+
CP000789_2 250 ----------SEVLNQMECSADLLLAIISDILDLSKIESV 279

CP000789_0959: domain 1 of 1, from 205 to 272: score 76.6, E = 2.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +++
CP000789_0 205 MRRNFFANVSHELRTPMTVLQGYLEMTED---------PDMIVGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ ++++r+++L+n+lL+ls+iea
CP000789_0 241 --------MWTKAHGVMTEQLNRMNSLVNQLLTLSKIEAA 272

CP000789_3306: domain 1 of 1, from 459 to 527: score 76.0, E = 2.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae+L +++ ++ ++ q
CP000789_3 459 LKDEFLATTSHELRTPLHGMVGIAETLVSGAN------GAIPASQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++++rl +L++dlLd+ +++ g
CP000789_3 498 ----------KYQLDIIIKSGQRLANLVDDLLDYHKMRYG 527

CP000789_0869: domain 1 of 1, from 282 to 347: score 69.1, E = 2.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ + l+eeq
CP000789_0 282 DKTTFISTISHELRTPLNGIVGLSRMLLD---------SQLTEEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +ti +a l ++ nd+ d+ + +
CP000789_0 318 ----------RKHMQTINVSAITLGNIFNDIIDMDKFDRR 347

CP000789_0526: domain 1 of 1, from 117 to 182: score 58.7, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL++ l+++ +
CP000789_0 117 AAKLLVRGLAHEIKNPLGGLRGAAQLLEK----------MLPDPSL- 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL + +
CP000789_0 153 ----------TEYTHIIIEQADRLRALVDRLLGPQKPGKK 182

CP000789_2686: domain 1 of 1, from 227 to 292: score 58.3, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+++g ++lL + ++ ++ q
CP000789_2 227 REQAFARYASHELRTPLTVMKGSSSLLAR---------SANTDFQ-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++++++++ +i+ lL l r e +
CP000789_2 263 ----------TRQVNRIQDATQQMSTMIDVLLGLVRYERN 292

CP000789_0151: domain 1 of 1, from 822 to 887: score 55.5, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++a+ L e ++++e+
CP000789_0 822 SKSRFLAAVSHDLMQPLNAARLFASSLSE---------VAKDSET-- 857

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++++ ++Li dlLd+sr+e+g
CP000789_0 858 ----------QKLSTHIESALGAAEDLIGDLLDISRLESG 887

CP000789_3053: domain 1 of 1, from 122 to 188: score 54.6, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L + ++l++ ++
CP000789_3 122 SLGRMVASLAHQVRTPLSSAMLYASNLAA---------PNLPPATK- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l++++nd+L +++ + +
CP000789_3 159 ----------DRFQSKLMDRLHDLEKQVNDMLLFAKGGDN 188

CP000789_0137: domain 1 of 1, from 249 to 311: score 50.4, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r+++ l+ + +++
CP000789_0 249 GQQRLLSDISHELRSPLTRLRMASALATR---------KQGESPE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea+rl+++i +lL+lsr++ +
CP000789_0 285 -------------LTRIDTEAQRLEQMIAELLELSRMQVN 311

CP000789_0563: domain 2 of 2, from 222 to 282: score 46.6, E = 6.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e+
CP000789_0 222 DRALLMAGISHDLRTPLTRIRLATEMMSP--------------ED-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i++++e ++++i++++d+ + +
CP000789_0 253 ----------SYLAEGIISDTEECNEIISQFMDYLKPVNK 282

CP000789_2167: domain 1 of 1, from 449 to 516: score 43.6, E = 4.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el++ el +e +
CP000789_2 449 ALGELTAGIAHEINNPTAVILGNVELIQFEL-------GEEASRV-- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i+ +++r++++ + lL++sr +
CP000789_2 487 ----------QEEIDAIHAQIDRIRNITRSLLQYSRQGGV 516

CP000789_2659: domain 1 of 1, from 461 to 530: score 30.3, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HE+R+PL+ +++ e+L+ +++ +++ eq+
CP000789_2 461 QSRALANSIAHEMRNPLAQVQLQFEALKQ------HIENHAPVEQI- 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++r ++Li+ +L ++
CP000789_2 501 ----------TLDIENGQAAIQRGRQLIDIILREVSDSSP 530


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 2 0|=
-14 38 0|====
-13 66 2|*=====
-12 173 81|======*========
-11 434 423|===================================*=
-10 631 785|===================================================== *
-9 666 810|======================================================== *
-8 549 606|============================================== *
-7 406 382|===============================*==
-6 252 220|==================*==
-5 117 120|=========*
-4 111 64|=====*====
-3 45 34|==*=
-2 26 17|=*=
-1 17 9|*=
0 10 4|*
1 4 2|*
> 2 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 217.0540
P(chi-square) = 4.015e-310

Total sequences searched: 3570

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: