hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000789.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000789_2600 CDS_2727227-2725857 58.9 3.9e-17 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000789_2600 1/1 250 315 .. 1 70 [] 58.9 3.9e-17
Alignments of top-scoring domains:
CP000789_2600: domain 1 of 1, from 250 to 315: score 58.9, E = 3.9e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD + Q L + k +l+l +++ +++ +++ +ld
CP000789_2 250 EKKHLARELHDDINQLLVSSKCHLDLMGHRI--EDE--KLKSHLDKS 292
relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+al
CP000789_2 293 QRSLITAINEVRHISHQLRPSAL 315
Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 48 0|====
-13 122 0|==========
-12 187 39|==*============
-11 308 327|======================== *
-10 681 759|===================================================== *
-9 722 862|======================================================== *
-8 540 664|========================================== *
-7 369 417|============================= *
-6 218 236|================= *
-5 183 126|=========*=====
-4 79 66|=====*=
-3 45 34|==*=
-2 35 17|=*=
-1 15 8|*=
0 6 4|*
1 6 2|*
2 1 1|*
> 3 5 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 658.1732
P(chi-square) = 0
Total sequences searched: 3570
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
