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3 accessions found for Vibrio harveyi ATCC BAA-1116  

Data for CP000790  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000790.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000790_2281 CDS_2114371-2112446 94.8 9.5e-27 1
CP000790_1381 CDS_1284613-1281656 90.5 1.5e-25 2
CP000790_0626 CDS_580751-583330 85.9 3.1e-24 1
CP000790_1428 CDS_1343579-1341795 78.6 3.6e-22 1
CP000790_1430 CDS_1344726-1348403 78.1 5.2e-22 1
CP000790_1885 CDS_1769667-1768222 71.4 3.9e-20 1
CP000790_2014 CDS_1895032-1893659 61.8 2e-17 1
CP000790_0567 CDS_531918-530632 59.3 1e-16 1
CP000790_0844 CDS_772016-773257 47.3 2.7e-13 1
CP000790_1375 CDS_1274177-1275517 46.6 4.2e-13 1
CP000790_0434 CDS_399938-398544 43.2 4e-12 1
CP000790_0269 CDS_247789-249162 41.8 9.7e-12 1
CP000790_0606 CDS_564430-565752 30.1 2e-08 1
CP000790_0998 CDS_938080-939501 29.0 4.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000790_2281 1/1 243 308 .. 1 87 [] 94.8 9.5e-27
CP000790_1381 2/2 469 534 .. 1 87 [] 90.1 2e-25
CP000790_0626 1/1 482 547 .. 1 87 [] 85.9 3.1e-24
CP000790_1428 1/1 269 334 .. 1 87 [] 78.6 3.6e-22
CP000790_1430 1/1 692 757 .. 1 87 [] 78.1 5.2e-22
CP000790_1885 1/1 263 328 .. 1 87 [] 71.4 3.9e-20
CP000790_2014 1/1 234 298 .. 1 87 [] 61.8 2e-17
CP000790_0567 1/1 211 276 .. 1 87 [] 59.3 1e-16
CP000790_0844 1/1 220 286 .. 1 87 [] 47.3 2.7e-13
CP000790_1375 1/1 229 291 .. 1 87 [] 46.6 4.2e-13
CP000790_0434 1/1 246 312 .. 1 87 [] 43.2 4e-12
CP000790_0269 1/1 257 320 .. 1 87 [] 41.8 9.7e-12
CP000790_0606 1/1 222 286 .. 1 87 [] 30.1 2e-08
CP000790_0998 1/1 265 332 .. 1 87 [] 29.0 4.1e-08

Alignments of top-scoring domains:
CP000790_2281: domain 1 of 1, from 243 to 308: score 94.8, E = 9.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTP+++I+g a+lL + t+l+e+q
CP000790_2 243 KKSEFLATMSHEIRTPMNGIIGIASLLGD---------TKLDEQQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i +++++l +i+d+Ld+s+ieag
CP000790_2 279 ----------KDFVSIINSSSNSLMVIIDDILDFSKIEAG 308

CP000790_1381: domain 2 of 2, from 469 to 534: score 90.1, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL + + l++ q
CP000790_1 469 AKSAFLATMSHEIRTPMNGVLGTARLLID---------SGLNPMQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e+i r+++ ll+++nd+Ld+s+ieag
CP000790_1 505 ----------KRYAEIINRSGKTLLAILNDVLDYSKIEAG 534

CP000790_0626: domain 1 of 1, from 482 to 547: score 85.9, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla +sHE+RTP+++I+g a+lL++ + + eq
CP000790_0 482 ARADFLAKMSHEIRTPINGILGVAQLLKD---------SVDTQEQ-- 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +++e+ll+ +nd+Ld+s+ie+g
CP000790_0 518 ----------KNQIDVLCHSGEHLLAVLNDILDFSKIEQG 547

CP000790_1428: domain 1 of 1, from 269 to 334: score 78.6, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+++++g ++++ + e e+++
CP000790_1 269 AKSQFLATMSHELRTPMNGVLGISQIIAN----------ETQEKTT- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++il+++++l ++nd+Ld+s+ e++
CP000790_1 305 ----------KEHVKIILDSVQHLMTILNDILDFSKVEEN 334

CP000790_1430: domain 1 of 1, from 692 to 757: score 78.1, E = 5.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ fla +sHELRTP++a++g+ elL+ ++++ e
CP000790_1 692 AREHFLAVVSHELRTPIAAMMGLMELLEQDVER---------KES-- 727

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ ++aerl+ ++nd+Ld+s+i+a+
CP000790_1 728 ----------KELLKSAMQSAERLQLQVNDILDFSKIDAN 757

CP000790_1885: domain 1 of 1, from 263 to 328: score 71.4, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + +l HEL+ PL+aI+g++e+L++ +l+ee++
CP000790_1 263 YVEEYVQTLTHELKSPLSAIKGASEILQM----------PLPEEKV- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+re++r+++Li+ lL+l+r+e
CP000790_1 299 ----------TRFAGNIERESDRMQSLIDKLLELARLEKR 328

CP000790_2014: domain 1 of 1, from 234 to 298: score 61.8, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sHELRTPL+ + ++lL++ ++eq
CP000790_2 234 KQRRLIRDVSHELRTPLARQNLVLHLLRK---------RVGDSEQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++ea+ l++Li ++L++sr+e+
CP000790_2 270 -----------SLVNRMEEEANELNHLIGEILEFSRLENA 298

CP000790_0567: domain 1 of 1, from 211 to 276: score 59.3, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++HELRTP+ ++ a+lL + ++l+e+q
CP000790_0 211 TNKMLTNAVAHELRTPIFRLQWQADLLAD---------AALNEQQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i ++++ +++++++lL ++++e +
CP000790_0 247 ----------QKYVDSIVEDIDDMENMVEELLYYAKMERP 276

CP000790_0844: domain 1 of 1, from 220 to 286: score 47.3, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP+ +I+g a++L + +e+++
CP000790_0 220 REQEFSRFASHELRTPIMVIKGSADILAR--------VSEQPPVA-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++ + + ++ L + +L l + +
CP000790_0 257 ----------QKAVRRMQTACDEMRVLTEAFLLLGKEKVE 286

CP000790_1375: domain 1 of 1, from 229 to 291: score 46.6, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sHE+RTPL+ I ++++ + + e
CP000790_1 229 HNRNLIADMSHEIRTPLARIEMAIDCVDK------------NIER-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+i+++++ ++ +d L+l++ie++
CP000790_1 262 ----------EQMLERIKSDTHKMRTTAEDTLTLAWIENE 291

CP000790_0434: domain 1 of 1, from 246 to 312: score 43.2, E = 4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++++HE++TPL++ + ++lL+++l + +e
CP000790_0 246 ELGELTSAVAHEIKTPLSSATMSCDLLEKQL--------PDNEVS-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i++ +er ++ ++L ++
CP000790_0 283 ----------HRHLARIRQGLERAAEISHEVLNYAHHKPI 312

CP000790_0269: domain 1 of 1, from 257 to 320: score 41.8, E = 9.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l lsH+L+TPL++++gy+e+ + + +e
CP000790_0 257 HRRQSLLQLSHDLKTPLSSVLGYLETWRL-----------QHPES-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ r e l+ ++ lLd +r ea+
CP000790_0 291 ----------DPLIDVAFRNCEKLSTQLHSLLDSARKEAP 320

CP000790_0606: domain 1 of 1, from 222 to 286: score 30.1, E = 2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++ HE RTPL+ I+++++l+++ +++e q
CP000790_0 222 QTHIFTLAIPHEVRTPLSRIQLATDLARR----------TKGEMQ-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i+r ++ +L +d+ lsr+ +
CP000790_0 257 ----------AELHDDIERYVDVVTDLTSDIVMLSRLSVN 286

CP000790_0998: domain 1 of 1, from 265 to 332: score 29.0, E = 4.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l l HELRTP++++++++e ++e+ ++l+e
CP000790_0 265 SRMLVLQILTHELRTPIASLSLTVEGFRREF-------EHLPESV-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++++rl++L + d+ + +++
CP000790_0 303 ----------YDEFRRLCEDTRRLRQLAEASKDYLQSDNQ 332


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 6 0|=
-14 36 0|=====
-13 123 1|*===============
-12 191 54|======*=================
-11 311 281|===================================*===
-10 361 522|============================================== *
-9 441 539|======================================================== *
-8 329 403|========================================== *
-7 218 254|============================ *
-6 159 146|==================*=
-5 69 80|=========*
-4 45 42|=====*
-3 36 22|==*==
-2 16 11|=*
-1 8 6|*
0 5 3|*
> 1 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 446.7418
P(chi-square) = 0

Total sequences searched: 2374

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: