Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Vibrio harveyi ATCC BAA-1116  

Data for CP000790  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000790.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000790_0654 CDS_606689-608377 67.2 9.2e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000790_0654 1/1 353 425 .. 1 70 [] 67.2 9.2e-20

Alignments of top-scoring domains:
CP000790_0654: domain 1 of 1, from 353 to 425: score 67.2, E = 9.2e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrllds...dkdpeeareal
ERa IARELHDs++Q+Ls +k+q++l++r + + +++++ ++ + +
CP000790_0 353 ERATIARELHDSLAQALSYLKIQVSLLKRSVKNipdERAIAQTNQVI 399

deirelarealaevRrllgdLRpaal<-*
+e+ + ++ a++++R+ll+++R ++
CP000790_0 400 AELDTGLSAAYTQLRELLTTFRLTIK 425


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 4 0|=
-14 87 0|===========
-13 140 0|==================
-12 181 26|===*===================
-11 222 217|===========================*
-10 455 504|========================================================= *
-9 447 573|======================================================== *
-8 329 441|========================================== *
-7 179 277|======================= *
-6 150 157|===================*
-5 83 84|==========*
-4 32 44|==== *
-3 21 22|==*
-2 20 11|=*=
-1 10 5|*=
0 2 2|*
1 3 1|*
2 1 0|=
3 2 0|=
4 1 0|=
5 0 0|
6 3 0|=
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1009.5214
P(chi-square) = 0

Total sequences searched: 2374

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: